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Slc6a21 solute carrier family 6 member 21 [ Mus musculus (house mouse) ]

Gene ID: 76713, updated on 8-Feb-2024

Summary

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Official Symbol
Slc6a21provided by MGI
Official Full Name
solute carrier family 6 member 21provided by MGI
Primary source
MGI:MGI:1923963
See related
Ensembl:ENSMUSG00000070568 AllianceGenome:MGI:1923963
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm19188; 1700039E15Rik
Summary
Predicted to be involved in sodium ion transmembrane transport. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A21P (solute carrier family 6 member 21, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 209.5) See more
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Genomic context

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Location:
7 B3; 7 29.23 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44926755..44938420)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45277331..45288996)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E872 Neighboring gene STARR-seq mESC enhancer starr_18835 Neighboring gene CD37 antigen Neighboring gene solute carrier family 6, member 16 Neighboring gene predicted gene, 23585 Neighboring gene STARR-positive B cell enhancer ABC_E6543 Neighboring gene predicted gene, 39006 Neighboring gene transient receptor potential cation channel, subfamily M, member 4 Neighboring gene ribosomal protein L14, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sodium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
solute carrier family 6 (neurotransmitter transporter)-like
Names
solute carrier family 6 (neurotransmitter transporter), member 20B pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033176.2 → NP_001028348.2  solute carrier family 6 (neurotransmitter transporter)-like

    Status: VALIDATED

    Source sequence(s)
    AC150897
    Consensus CDS
    CCDS21238.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    44926755..44938420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312377.1 → XP_017167866.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X2

    UniProtKB/TrEMBL
    A0A1B0GSD2
    Related
    ENSMUSP00000147890.2, ENSMUST00000210861.2
    Conserved Domains (1) summary
    cd11502
    Location:48 → 621
    SLC6sbd_NTT5; Neurotransmitter transporter 5; solute-binding domain

  2. XM_011250910.1 → XP_011249212.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:48 → 601
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_017312376.1 → XP_017167865.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X1

    Conserved Domains (1) summary
    cl00456
    Location:48 → 622
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_017312379.1 → XP_017167868.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X5

    Conserved Domains (1) summary
    cl00456
    Location:48 → 596
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_017312378.1 → XP_017167867.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X4

    Conserved Domains (1) summary
    cl00456
    Location:48 → 596
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  6. XM_017312380.2 → XP_017167869.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X7

    Conserved Domains (1) summary
    cl00456
    Location:48 → 349
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  7. XM_011250911.1 → XP_011249213.1  solute carrier family 6 (neurotransmitter transporter)-like isoform X6

    Conserved Domains (1) summary
    cl00456
    Location:3 → 419
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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