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Polr1has RNA polymerase I subunit H, antisense [ Mus musculus (house mouse) ]

Gene ID: 76416, updated on 5-Mar-2024

Summary

Official Symbol
Polr1hasprovided by MGI
Official Full Name
RNA polymerase I subunit H, antisenseprovided by MGI
Primary source
MGI:MGI:1923666
See related
Ensembl:ENSMUSG00000036214 AllianceGenome:MGI:1923666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znrd1as; Znrd1-as; 1700022C21Rik
Summary
Orthologous to human ZNRD1ASP (zinc ribbon domain containing 1 antisense, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 9.8), bladder adult (RPKM 2.8) and 13 other tissues See more
Orthologs
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Genomic context

Location:
17 B1; 17 19.16 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (37269483..37276722)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36958555..36965830)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory inhibitor subunit 11 Neighboring gene STARR-positive B cell enhancer ABC_E7532 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:37088519-37088789 Neighboring gene RNA polymerase I subunit H Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:37095409-37095518 Neighboring gene histocompatibility 2, M region locus 6, pseudogene Neighboring gene STARR-seq mESC enhancer starr_42496 Neighboring gene RIKEN cDNA 2410137M14 gene Neighboring gene histocompatibility 2, M region locus 4, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
putative uncharacterized protein ZNRD1-AS1
Names
T-complex testis-expressed protein 4
ZNRD1 antisense RNA 1
ZNRD1 antisense gene protein 1
zinc ribbon domain containing 1, antisense

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368424.1NP_001355353.1  putative uncharacterized protein ZNRD1-AS1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK161503, BY706320, CR956641
    Consensus CDS
    CCDS89093.1
    UniProtKB/Swiss-Prot
    Q8R0E5, Q9DA28
    Related
    ENSMUSP00000134016.2, ENSMUST00000173814.2
  2. NM_001368425.1NP_001355354.1  putative uncharacterized protein ZNRD1-AS1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR956641
    Consensus CDS
    CCDS89093.1
    UniProtKB/Swiss-Prot
    Q8R0E5, Q9DA28
  3. NM_001368426.1NP_001355355.1  putative uncharacterized protein ZNRD1-AS1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CR956641
    Consensus CDS
    CCDS89092.1
    UniProtKB/TrEMBL
    A0A1B0GRK2
    Related
    ENSMUSP00000147556.2, ENSMUST00000209623.2
  4. NM_029602.1NP_083878.1  putative uncharacterized protein ZNRD1-AS1 isoform 1

    See identical proteins and their annotated locations for NP_083878.1

    Status: VALIDATED

    Source sequence(s)
    BC027007
    Consensus CDS
    CCDS28731.1
    UniProtKB/TrEMBL
    A0A0R4J0L3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    37269483..37276722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250134.2XP_030105994.1  putative uncharacterized protein ZNRD1-AS1 isoform X1

    UniProtKB/Swiss-Prot
    Q8R0E5, Q9DA28