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Ankrd48 ankyrin repeat domain 48 [ Mus musculus (house mouse) ]

Gene ID: 76389, updated on 23-Apr-2024

Summary

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Official Symbol
Ankrd48provided by MGI
Official Full Name
ankyrin repeat domain 48provided by MGI
Primary source
MGI:MGI:1923639
See related
Ensembl:ENSMUSG00000020481 AllianceGenome:MGI:1923639
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GC3; Ankrd36; 1700008J08Rik; 1700012M14Rik
Summary
Predicted to be located in plasma membrane. Orthologous to several human genes including ANKRD18A (ankyrin repeat domain 18A); ANKRD18B (ankyrin repeat domain 18B); and ANKRD20A1 (ankyrin repeat domain 20 family member A1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 34.3) See more
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Genomic context

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Location:
11 A1; 11 3.71 cM
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (5519680..5639617)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (5569680..5689617)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39573 Neighboring gene predicted gene 3186 Neighboring gene predicted gene 11964 Neighboring gene predicted gene, 53663 Neighboring gene mitochondrial ribosomal protein S24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression of testicular germ cell genes identified by differential display analysis. Anway MD, et al. J Androl, 2003 Mar-Apr. PMID 12634303
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain 36

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419746.1 → NP_001406675.1  ankyrin repeat domain 36 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL662876, AL669935

  2. NM_023816.3 → NP_076305.2  ankyrin repeat domain 36 isoform 2

    See identical proteins and their annotated locations for NP_076305.2

    Status: VALIDATED

    Source sequence(s)
    AL662876, AL669935
    Consensus CDS
    CCDS36103.1
    UniProtKB/TrEMBL
    D3Z4K0, Q5QNR3
    Related
    ENSMUSP00000105482.2, ENSMUST00000109856.8
    Conserved Domains (3) summary
    cd00204
    Location:61 → 186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:37 → 130
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    5519680..5639617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314823.2 → XP_017170312.1  ankyrin repeat domain 36 isoform X4

    UniProtKB/TrEMBL
    Q5QNR3
    Related
    ENSMUSP00000122397.2, ENSMUST00000118112.9
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_017314820.1 → XP_017170309.1  ankyrin repeat domain 36 isoform X1

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_017314821.1 → XP_017170310.1  ankyrin repeat domain 36 isoform X2

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_017314828.1 → XP_017170317.1  ankyrin repeat domain 36 isoform X10

    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_017314822.1 → XP_017170311.1  ankyrin repeat domain 36 isoform X3

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_017314824.1 → XP_017170313.1  ankyrin repeat domain 36 isoform X5

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_006514890.2 → XP_006514953.1  ankyrin repeat domain 36 isoform X6

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  8. XM_030246415.1 → XP_030102275.1  ankyrin repeat domain 36 isoform X7

    UniProtKB/TrEMBL
    Q5QNR3
    Conserved Domains (2) summary
    sd00045
    Location:68 → 97
    ANK; ANK repeat [structural motif]
    cl39094
    Location:57 → 240
    Ank_2; Ankyrin repeats (3 copies)

  9. XM_017314827.1 → XP_017170316.1  ankyrin repeat domain 36 isoform X9

  10. XM_017314826.2 → XP_017170315.1  ankyrin repeat domain 36 isoform X8

RNA

  1. XR_001780072.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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