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Ccdc138 coiled-coil domain containing 138 [ Mus musculus (house mouse) ]

Gene ID: 76138, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc138provided by MGI
Official Full Name
coiled-coil domain containing 138provided by MGI
Primary source
MGI:MGI:1923388
See related
Ensembl:ENSMUSG00000038010 AllianceGenome:MGI:1923388
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6230424H07Rik
Summary
Orthologous to human CCDC138 (coiled-coil domain containing 138). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 2.3), CNS E11.5 (RPKM 1.9) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc138 in Genome Data Viewer
Location:
10 B4; 10 29.35 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (58333523..58412066)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (58497699..58576244)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6854 Neighboring gene LIM and senescent cell antigen-like domains 1 Neighboring gene predicted gene, 23058 Neighboring gene STARR-positive B cell enhancer ABC_E2936 Neighboring gene RAN binding protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E10608 Neighboring gene STARR-positive B cell enhancer ABC_E10609 Neighboring gene STARR-seq mESC enhancer starr_26758 Neighboring gene predicted gene, 18042 Neighboring gene ectodysplasin-A receptor Neighboring gene predicted gene, 36158

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 138

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162956.1 → NP_001156428.1  coiled-coil domain-containing protein 138

    See identical proteins and their annotated locations for NP_001156428.1

    Status: VALIDATED

    Source sequence(s)
    AC158593
    Consensus CDS
    CCDS48565.1
    UniProtKB/Swiss-Prot
    Q0VF22, Q8CG93
    Related
    ENSMUSP00000043040.9, ENSMUST00000036576.10
    Conserved Domains (1) summary
    pfam07798
    Location:229 → 325
    DUF1640; Protein of unknown function (DUF1640)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    58333523..58412066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245353.2 → XP_030101213.1  coiled-coil domain-containing protein 138 isoform X4

    Conserved Domains (1) summary
    pfam12128
    Location:30 → 204
    DUF3584; Protein of unknown function (DUF3584)

  2. XM_036156075.1 → XP_036011968.1  coiled-coil domain-containing protein 138 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:53 → 213
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_030245352.2 → XP_030101212.1  coiled-coil domain-containing protein 138 isoform X4

    Conserved Domains (1) summary
    pfam12128
    Location:30 → 204
    DUF3584; Protein of unknown function (DUF3584)

  4. XM_006514273.5 → XP_006514336.1  coiled-coil domain-containing protein 138 isoform X1

    Conserved Domains (1) summary
    pfam12128
    Location:147 → 321
    DUF3584; Protein of unknown function (DUF3584)

  5. XM_036156076.1 → XP_036011969.1  coiled-coil domain-containing protein 138 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:53 → 213
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_036156074.1 → XP_036011967.1  coiled-coil domain-containing protein 138 isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:96 → 256
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_004936299.1 RNA Sequence

  2. XR_004936298.1 RNA Sequence

  3. XR_004936300.1 RNA Sequence

  4. XR_004936301.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VF22.1 GenPept UniProtKB/Swiss-Prot:Q0VF22

Gene LinkOut

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