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Gm11346 predicted gene 11346 [ Mus musculus (house mouse) ]

Gene ID: 76024, updated on 8-Feb-2024

Summary

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Official Symbol
Gm11346provided by MGI
Official Full Name
predicted gene 11346provided by MGI
Gene description
X-linked lymphocyte-regulated 5 pseudogene
Primary source
MGI:MGI:1923274
See related
AllianceGenome:MGI:1923274
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11347; 5830431A10Rik
Expression
Broad expression in spleen adult (RPKM 1.4), mammary gland adult (RPKM 0.7) and 15 other tissues See more
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Genomic context

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Location:
13 A3.1; 13 10.52 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (24782107..24788750, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (24598124..24604767, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2401 Neighboring gene STARR-positive B cell enhancer ABC_E11536 Neighboring gene STARR-seq mESC enhancer starr_33981 Neighboring gene predicted gene 11342 Neighboring gene cytidine monophospho-N-acetylneuraminic acid hydroxylase Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:24484609-24484810 Neighboring gene STARR-positive B cell enhancer ABC_E11537 Neighboring gene STARR-positive B cell enhancer ABC_E3075 Neighboring gene STARR-positive B cell enhancer ABC_E4062 Neighboring gene STARR-positive B cell enhancer ABC_E9870 Neighboring gene STARR-positive B cell enhancer ABC_E5384 Neighboring gene STARR-positive B cell enhancer ABC_E8517 Neighboring gene STARR-seq mESC enhancer starr_33982 Neighboring gene STARR-positive B cell enhancer ABC_E5385 Neighboring gene STARR-positive B cell enhancer ABC_E3076 Neighboring gene STARR-positive B cell enhancer ABC_E8518 Neighboring gene predicted gene, 22013 Neighboring gene STARR-seq mESC enhancer starr_33983 Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene STARR-positive B cell enhancer ABC_E10785 Neighboring gene STARR-positive B cell enhancer mm9_chr13:24705319-24705620 Neighboring gene STARR-positive B cell enhancer ABC_E7216 Neighboring gene armadillo-like helical domain containing 2 Neighboring gene geminin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • X-linked lymphocyte-regulated 5 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024599.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC064072

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    24782107..24788750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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