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Hdnr Hand2 downstream lncRNA [ Mus musculus (house mouse) ]

Gene ID: 75996, updated on 8-Feb-2024

Summary

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Official Symbol
Hdnrprovided by MGI
Official Full Name
Hand2 downstream lncRNAprovided by MGI
Primary source
MGI:MGI:1923246
See related
Ensembl:ENSMUSG00000097910 AllianceGenome:MGI:1923246
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hdn; Handlr; handsdown; 5033428I22Rik
Summary
Is expressed in several structures, including branchial arch; heart; limb; limb bud; and trunk mesenchyme. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 1.8), limb E14.5 (RPKM 0.9) and 9 other tissues See more
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Genomic context

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See Hdnr in Genome Data Viewer
Location:
8 B2; 8 29.8 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (57785470..57807615)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (57332435..57354580)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene Hand2, opposite strand 1 Neighboring gene STARR-seq mESC enhancer starr_21524 Neighboring gene VISTA enhancer mm1283 Neighboring gene heart and neural crest derivatives expressed 2 Neighboring gene predicted gene, 34030 Neighboring gene STARR-seq mESC enhancer starr_21526 Neighboring gene predicted gene, 34099 Neighboring gene mannosidase 2, alpha 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development. Ritter N, et al. Dev Cell, 2019 Sep 9. PMID 31422919
  2. Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. George MR, et al. Development, 2019 Dec 9. PMID 31784461, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. lncRNA locus Handsdown is essential for mouse embryonic development.
    Title: The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131041.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK017203
    Related
    ENSMUST00000210614.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    57785470..57807615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.