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Ccdc162 coiled-coil domain containing 162 [ Mus musculus (house mouse) ]

Gene ID: 75973, updated on 8-Feb-2024

Summary

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Official Symbol
Ccdc162provided by MGI
Official Full Name
coiled-coil domain containing 162provided by MGI
Primary source
MGI:MGI:1923223
See related
Ensembl:ENSMUSG00000075225 AllianceGenome:MGI:1923223
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm61; Gm6976; Gm29096; Ccdc162p; 5033413D22Rik
Summary
Orthologous to human CCDC162P (coiled-coil domain containing 162, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lung adult (RPKM 1.3), ovary adult (RPKM 1.0) and 16 other tissues See more
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Genomic context

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Location:
10 B2; 10 22.48 cM
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (41414838..41592586, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (41538844..41716520, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2932 Neighboring gene STARR-positive B cell enhancer ABC_E5127 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 6 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:41272644-41272850 Neighboring gene RIKEN cDNA 5730435O14 gene Neighboring gene CD164 antigen Neighboring gene STARR-positive B cell enhancer mm9_chr10:41292844-41293145 Neighboring gene predicted gene 17196 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:41339920-41340109 Neighboring gene STARR-positive B cell enhancer ABC_E5128 Neighboring gene microRNA 3473b Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:41472075-41472184 Neighboring gene centrosomal protein 57-like 1 Neighboring gene cDNA sequence BC048559 Neighboring gene STARR-seq mESC enhancer starr_26466 Neighboring gene STARR-seq mESC enhancer starr_26467 Neighboring gene STARR-seq mESC enhancer starr_26468 Neighboring gene STARR-seq mESC enhancer starr_26469 Neighboring gene sestrin 1 Neighboring gene armadillo repeat containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain containing 162
Names
coiled-coil domain-containing protein 162

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358562.1 → NP_001345491.1  coiled-coil domain containing 162

    Status: VALIDATED

    Source sequence(s)
    AC132290, AC161426
    Consensus CDS
    CCDS56700.3
    Related
    ENSMUSP00000140774.3, ENSMUST00000189488.3
    Conserved Domains (2) summary
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)
    cl25732
    Location:1752 → 2088
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    41414838..41592586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011243230.4 → XP_011241532.1  coiled-coil domain containing 162 isoform X3

    Conserved Domains (3) summary
    TIGR00606
    Location:1580 → 1820
    rad50
    COG1196
    Location:1749 → 2082
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15082
    Location:4 → 135
    DUF4549; Domain of unknown function (DUF4549)

  2. XM_017314137.3 → XP_017169626.1  coiled-coil domain containing 162 isoform X4

    Conserved Domains (3) summary
    TIGR00606
    Location:1544 → 1784
    rad50
    COG1196
    Location:1713 → 2046
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

  3. XM_011243229.4 → XP_011241531.1  coiled-coil domain containing 162 isoform X2

    Conserved Domains (3) summary
    TIGR00606
    Location:1589 → 1829
    rad50
    COG1196
    Location:1758 → 2091
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

  4. XM_011243226.4 → XP_011241528.1  coiled-coil domain containing 162 isoform X1

    See identical proteins and their annotated locations for XP_011241528.1

    Conserved Domains (3) summary
    TIGR00606
    Location:1590 → 1830
    rad50
    COG1196
    Location:1759 → 2092
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

  5. XM_030245351.2 → XP_030101211.1  coiled-coil domain containing 162 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:1472 → 1805
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR04523
    Location:1346 → 1590
    Mplasa_alph_rch; helix-rich Mycoplasma protein

  6. XM_017314138.1 → XP_017169627.1  coiled-coil domain containing 162 isoform X8

    Conserved Domains (1) summary
    COG1196
    Location:734 → 1067
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_006512905.5 → XP_006512968.1  coiled-coil domain containing 162 isoform X6

    Conserved Domains (1) summary
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

  8. XM_006512907.5 → XP_006512970.1  coiled-coil domain containing 162 isoform X7

    Conserved Domains (1) summary
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

  9. XM_011243234.4 → XP_011241536.1  coiled-coil domain containing 162 isoform X9

    Conserved Domains (1) summary
    pfam15082
    Location:4 → 145
    DUF4549; Domain of unknown function (DUF4549)

RNA

  1. XR_003948818.2 RNA Sequence

  2. XR_871443.4 RNA Sequence

  3. XR_001779633.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001177571.1: Suppressed sequence

    Description
    NM_001177571.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NM_001303469.1: Suppressed sequence

    Description
    NM_001303469.1: This RefSeq was removed because it is thought to represent an incomplete transcript and protein.

  3. NM_029493.2: Suppressed sequence

    Description
    NM_029493.2: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VG85.4 GenPept UniProtKB/Swiss-Prot:Q0VG85

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