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Atxn7l1os2 ataxin 7-like 1, opposite strand 2 [ Mus musculus (house mouse) ]

Gene ID: 75836, updated on 8-Feb-2024

Summary

Official Symbol
Atxn7l1os2provided by MGI
Official Full Name
ataxin 7-like 1, opposite strand 2provided by MGI
Primary source
MGI:MGI:1923086
See related
Ensembl:ENSMUSG00000085664 AllianceGenome:MGI:1923086
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930556N08Rik
Expression
Broad expression in testis adult (RPKM 2.8), thymus adult (RPKM 2.6) and 28 other tissues See more
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Genomic context

Location:
12 A3; 12 14.29 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (33408242..33444759, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (33358243..33394760, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA F730043M19 gene Neighboring gene STARR-seq mESC enhancer starr_31887 Neighboring gene ataxin 7-like 1 Neighboring gene predicted gene, 38649 Neighboring gene STARR-positive B cell enhancer ABC_E11509 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:33987074-33987296 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:34000210-34000400 Neighboring gene STARR-seq mESC enhancer starr_31895 Neighboring gene EF-hand calcium binding domain 10 Neighboring gene STARR-seq mESC enhancer starr_31896 Neighboring gene STARR-positive B cell enhancer ABC_E2381 Neighboring gene RNA polymerase I subunit F

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • Atxn7l1 opposite strand transcript 2

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC160112, AK016151
    Related
    ENSMUST00000138617.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    33408242..33444759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)