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Ttc23l tetratricopeptide repeat domain 23-like [ Mus musculus (house mouse) ]

Gene ID: 75777, updated on 5-Mar-2024

Summary

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Official Symbol
Ttc23lprovided by MGI
Official Full Name
tetratricopeptide repeat domain 23-likeprovided by MGI
Primary source
MGI:MGI:1923027
See related
Ensembl:ENSMUSG00000022249 AllianceGenome:MGI:1923027
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930401A09Rik
Summary
Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human TTC23L (tetratricopeptide repeat domain 23 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 20.6) See more
Orthologs
human all
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Genomic context

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Location:
15 A1; 15 5.35 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (10497309..10559006, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (10497223..10558775, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C21 Neighboring gene STARR-positive B cell enhancer ABC_E9414 Neighboring gene STARR-seq mESC enhancer starr_37954 Neighboring gene BRX1, biogenesis of ribosomes Neighboring gene RAD1 checkpoint DNA exonuclease Neighboring gene STARR-seq mESC enhancer starr_37955 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene retinoic acid induced 14 Neighboring gene predicted gene 10389

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 23-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374772.1 → NP_001361701.1  tetratricopeptide repeat protein 23-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102101, AC158921
    Consensus CDS
    CCDS88733.1
    UniProtKB/TrEMBL
    A0A338P6B7
    Related
    ENSMUSP00000155921.2, ENSMUST00000167842.9
    Conserved Domains (2) summary
    sd00006
    Location:212 → 244
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:248 → 317
    TPR_12; Tetratricopeptide repeat

  2. NM_001378877.1 → NP_001365806.1  tetratricopeptide repeat protein 23-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC102101, AC158921
    Conserved Domains (2) summary
    sd00006
    Location:236 → 268
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:238 → 303
    TPR_12; Tetratricopeptide repeat

  3. NM_001378878.1 → NP_001365807.1  tetratricopeptide repeat protein 23-like isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158921
    Conserved Domains (2) summary
    sd00006
    Location:236 → 268
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:238 → 303
    TPR_12; Tetratricopeptide repeat

  4. NM_029430.1 → NP_083706.1  tetratricopeptide repeat protein 23-like isoform 1

    See identical proteins and their annotated locations for NP_083706.1

    Status: VALIDATED

    Source sequence(s)
    AK015027, BC145852
    Consensus CDS
    CCDS49582.1
    UniProtKB/Swiss-Prot
    A3KMM7, A6H6E9, Q9D5Q3
    Related
    ENSMUSP00000022857.8, ENSMUST00000022857.14
    Conserved Domains (2) summary
    sd00006
    Location:212 → 244
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:248 → 317
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    10497309..10559006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248814.2 → XP_030104674.1  tetratricopeptide repeat protein 23-like isoform X2

    Conserved Domains (2) summary
    sd00006
    Location:236 → 268
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:238 → 303
    TPR_12; Tetratricopeptide repeat

  2. XM_017316786.3 → XP_017172275.1  tetratricopeptide repeat protein 23-like isoform X1

    Conserved Domains (2) summary
    sd00006
    Location:236 → 268
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:272 → 341
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6H6E9.1 GenPept UniProtKB/Swiss-Prot:A6H6E9

Gene LinkOut

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