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Vsig10l V-set and immunoglobulin domain containing 10 like [ Mus musculus (house mouse) ]

Gene ID: 75690, updated on 5-Mar-2024

Summary

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Official Symbol
Vsig10lprovided by MGI
Official Full Name
V-set and immunoglobulin domain containing 10 likeprovided by MGI
Primary source
MGI:MGI:1922940
See related
Ensembl:ENSMUSG00000070604 AllianceGenome:MGI:1922940
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in nucleoplasm. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in stomach adult (RPKM 12.0), testis adult (RPKM 4.2) and 22 other tissues See more
Orthologs
human all
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Genomic context

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See Vsig10l in Genome Data Viewer
Location:
7 B3; 7 28.25 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43112460..43121443)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (43462845..43472019)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9689 Neighboring gene claudin domain containing 2 Neighboring gene electron transferring flavoprotein, beta polypeptide Neighboring gene microRNA 7051 Neighboring gene STARR-positive B cell enhancer ABC_E4923 Neighboring gene predicted gene, 39000 Neighboring gene IgLON family member 5 Neighboring gene Siglec family like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Clone Names

  • 2210412E05Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
V-set and immunoglobulin domain-containing protein 10-like
Names
ZV-set and immunoglobulin domain containing 10 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290316.2 → NP_001277245.1  V-set and immunoglobulin domain-containing protein 10-like isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC154108
    Consensus CDS
    CCDS85281.1
    UniProtKB/TrEMBL
    A0A0N4SUI1
    Related
    ENSMUSP00000144692.2, ENSMUST00000203769.2
    Conserved Domains (4) summary
    cd00096
    Location:205 → 274
    Ig; Immunoglobulin domain
    smart00410
    Location:298 → 375
    IG_like; Immunoglobulin like
    pfam07679
    Location:187 → 280
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:287 → 375
    Ig_2; Immunoglobulin domain

  2. NM_001368881.1 → NP_001355810.1  V-set and immunoglobulin domain-containing protein 10-like isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC154108
    Consensus CDS
    CCDS90217.1
    UniProtKB/Swiss-Prot
    D3YWE2, D3YZF7
    Related
    ENSMUSP00000103611.2, ENSMUST00000107977.4
    Conserved Domains (3) summary
    pfam13895
    Location:388 → 477
    Ig_2; Immunoglobulin domain
    cd00096
    Location:307 → 378
    Ig; Immunoglobulin domain
    pfam07679
    Location:577 → 640
    I-set; Immunoglobulin I-set domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    43112460..43121443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_391405.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YZF7.1 GenPept UniProtKB/Swiss-Prot:D3YZF7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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