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Ccdc172 coiled-coil domain containing 172 [ Mus musculus (house mouse) ]

Gene ID: 75645, updated on 30-Apr-2024

Summary

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Official Symbol
Ccdc172provided by MGI
Official Full Name
coiled-coil domain containing 172provided by MGI
Primary source
MGI:MGI:1922895
See related
Ensembl:ENSMUSG00000025090 AllianceGenome:MGI:1922895
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700011F14Rik
Summary
Located in cytoplasm. Orthologous to human CCDC172 (coiled-coil domain containing 172). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 3.7) See more
Orthologs
human all
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Genomic context

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Location:
19 D2; 19 54.35 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (58500416..58546504)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (58511985..58553104)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41876 Neighboring gene predicted gene, 33306 Neighboring gene STARR-seq mESC enhancer starr_46577 Neighboring gene STARR-seq mESC enhancer starr_46578 Neighboring gene STARR-seq mESC enhancer starr_46581 Neighboring gene RIKEN cDNA 1810007D17 gene Neighboring gene pancreatic lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Molecular cloning and subcellular localization of Tektin2-binding protein 1 (Ccdc 172) in rat spermatozoa. Yamaguchi A, et al. J Histochem Cytochem, 2014 Apr. PMID 24394471, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Clone Names

  • MGC58650

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in sperm midpiece ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 172
Names
TEKT2-binding protein 2
UPF0628 protein C10orf96 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001373968.2 → NP_001360897.2  coiled-coil domain-containing protein 172 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC158904
    UniProtKB/Swiss-Prot
    Q810N9, Q9DAG3
    Conserved Domains (1) summary
    TIGR02168
    Location:17 → 203
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001373969.2 → NP_001360898.1  coiled-coil domain-containing protein 172 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC158904
    Consensus CDS
    CCDS38029.1
    UniProtKB/Swiss-Prot
    Q810N9, Q9DAG3
    Conserved Domains (1) summary
    TIGR02168
    Location:17 → 203
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. NM_001374039.1 → NP_001360968.1  coiled-coil domain-containing protein 172 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC158904
    Related
    ENSMUSP00000158558.2, ENSMUST00000235305.2
    Conserved Domains (1) summary
    TIGR02168
    Location:17 → 183
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. NM_029372.3 → NP_083648.1  coiled-coil domain-containing protein 172 isoform 1

    See identical proteins and their annotated locations for NP_083648.1

    Status: VALIDATED

    Source sequence(s)
    AC158904
    Consensus CDS
    CCDS38029.1
    UniProtKB/Swiss-Prot
    Q810N9, Q9DAG3
    Related
    ENSMUSP00000068972.7, ENSMUST00000069419.8
    Conserved Domains (1) summary
    TIGR02168
    Location:17 → 203
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    58500416..58546504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527422.2 → XP_006527485.1  coiled-coil domain-containing protein 172 isoform X1

    Conserved Domains (1) summary
    TIGR02168
    Location:100 → 300
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_017318304.1 → XP_017173793.1  coiled-coil domain-containing protein 172 isoform X3

    Conserved Domains (1) summary
    pfam15898
    Location:109 → 165
    PRKG1_interact; cGMP-dependent protein kinase interacting domain

  3. XM_006527423.1 → XP_006527486.1  coiled-coil domain-containing protein 172 isoform X2

    Conserved Domains (1) summary
    TIGR02168
    Location:100 → 286
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RNA

  1. XR_004940180.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q810N9.1 GenPept UniProtKB/Swiss-Prot:Q810N9

Gene LinkOut

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