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Tex30 testis expressed 30 [ Mus musculus (house mouse) ]

Gene ID: 75623, updated on 5-Mar-2024

Summary

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Official Symbol
Tex30provided by MGI
Official Full Name
testis expressed 30provided by MGI
Primary source
MGI:MGI:1922873
See related
Ensembl:ENSMUSG00000026049 AllianceGenome:MGI:1922873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700029F09Rik; 3110030D08Rik
Summary
Predicted to enable hydrolase activity. Is expressed in diencephalon lateral wall ventricular layer; midbrain ventricular layer; and telencephalon ventricular layer. Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 23.7), placenta adult (RPKM 9.9) and 12 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 C1.1; 1 23.54 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (44125773..44141650, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (44086613..44102491, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene methyltransferase 21C, AARS1 lysine Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44099123-44099276 Neighboring gene coiled-coil domain containing 168 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44176158-44176267 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene STARR-positive B cell enhancer mm9_chr1:44204561-44204862 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. DYRK1a mediates BAFF-induced noncanonical NF-κB activation to promote autoimmunity and B-cell leukemogenesis. Li Y, et al. Blood, 2021 Dec 9. PMID 34255829, Free PMC Article
  2. ALS-linked loss of Cyclin-F function affects HSP90. Siebert A, et al. Life Sci Alliance, 2022 Sep 16. PMID 36114006, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC118304

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-expressed protein 30
Names
testis-expressed sequence 30 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356296.1 → NP_001343225.1  testis-expressed protein 30

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC123800, BC099557, BQ032225
    Consensus CDS
    CCDS48249.1
    UniProtKB/Swiss-Prot
    Q3TUU5, Q4KKZ6, Q9D9T9
    Related
    ENSMUSP00000115068.2, ENSMUST00000133677.8
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  2. NM_001356297.1 → NP_001343226.1  testis-expressed protein 30

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC123800
    Consensus CDS
    CCDS48249.1
    UniProtKB/Swiss-Prot
    Q3TUU5, Q4KKZ6, Q9D9T9
    Related
    ENSMUSP00000120928.2, ENSMUST00000150911.8
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  3. NM_029368.2 → NP_083644.1  testis-expressed protein 30

    See identical proteins and their annotated locations for NP_083644.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) repesents the longest transcript. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC123800, AK160565, BQ032225
    Consensus CDS
    CCDS48249.1
    UniProtKB/Swiss-Prot
    Q3TUU5, Q4KKZ6, Q9D9T9
    Related
    ENSMUSP00000027215.6, ENSMUST00000027215.12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    44125773..44141650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238615.3 → XP_011236917.1  testis-expressed protein 30 isoform X2

    See identical proteins and their annotated locations for XP_011236917.1

    UniProtKB/Swiss-Prot
    Q3TUU5
    Conserved Domains (1) summary
    cl21494
    Location:57 → 178
    Abhydrolase; alpha/beta hydrolases

  2. XM_006496315.5 → XP_006496378.1  testis-expressed protein 30 isoform X1

    See identical proteins and their annotated locations for XP_006496378.1

    UniProtKB/Swiss-Prot
    Q3TUU5, Q4KKZ6, Q9D9T9
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  3. XM_011238616.3 → XP_011236918.1  testis-expressed protein 30 isoform X2

    See identical proteins and their annotated locations for XP_011236918.1

    UniProtKB/Swiss-Prot
    Q3TUU5
    Conserved Domains (1) summary
    cl21494
    Location:57 → 178
    Abhydrolase; alpha/beta hydrolases

  4. XM_036154146.1 → XP_036010039.1  testis-expressed protein 30 isoform X1

    UniProtKB/Swiss-Prot
    Q3TUU5, Q4KKZ6, Q9D9T9
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  5. XM_036154150.1 → XP_036010043.1  testis-expressed protein 30 isoform X3

    Conserved Domains (1) summary
    cl21494
    Location:23 → 144
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3TUU5.1 GenPept UniProtKB/Swiss-Prot:Q3TUU5

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