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Smim15 small integral membrane protein 15 [ Mus musculus (house mouse) ]

Gene ID: 75616, updated on 5-Mar-2024

Summary

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Official Symbol
Smim15provided by MGI
Official Full Name
small integral membrane protein 15provided by MGI
Primary source
MGI:MGI:1922866
See related
Ensembl:ENSMUSG00000071180 AllianceGenome:MGI:1922866
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810008M24Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM15 (small integral membrane protein 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in bladder adult (RPKM 21.8), CNS E11.5 (RPKM 14.4) and 23 other tissues See more
Orthologs
human all
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Genomic context

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Location:
13 D2.1; 13 59.63 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (108181008..108185680)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (108044474..108049146)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B230220B15 gene Neighboring gene STARR-seq mESC enhancer starr_35590 Neighboring gene predicted gene, 41055 Neighboring gene STARR-positive B cell enhancer ABC_E8544 Neighboring gene STARR-seq mESC enhancer starr_35592 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene STARR-positive B cell enhancer ABC_E7278 Neighboring gene predicted gene, 52057 Neighboring gene STARR-positive B cell enhancer mm9_chr13:108943188-108943489 Neighboring gene STARR-positive B cell enhancer ABC_E5415 Neighboring gene excision repaiross-complementing rodent repair deficiency, complementation group 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812
  2. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small integral membrane protein 15
Names
UPF0542 protein C5orf43 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048250.2 → NP_001041715.1  small integral membrane protein 15

    See identical proteins and their annotated locations for NP_001041715.1

    Status: PROVISIONAL

    Source sequence(s)
    AK139507
    Consensus CDS
    CCDS36777.1
    UniProtKB/Swiss-Prot
    Q3UTD9
    Related
    ENSMUSP00000093110.5, ENSMUST00000095458.6
    Conserved Domains (1) summary
    pfam15086
    Location:5 → 71
    UPF0542; Uncharacterized protein family UPF0542

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    108181008..108185680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UTD9.1 GenPept UniProtKB/Swiss-Prot:Q3UTD9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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