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2010109A12Rik RIKEN cDNA 2010109A12 gene [ Mus musculus (house mouse) ]

Gene ID: 75610, updated on 8-Feb-2024

Summary

Official Symbol
2010109A12Rikprovided by MGI
Official Full Name
RIKEN cDNA 2010109A12 geneprovided by MGI
Primary source
MGI:MGI:1922860
See related
Ensembl:ENSMUSG00000029384 AllianceGenome:MGI:1922860
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 6.3) and CNS E11.5 (RPKM 0.3) See more
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Genomic context

Location:
5 E2; 5 47.29 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (93354377..93361333)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (93206518..93213474)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene septin 11 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93522357-93522466 Neighboring gene STARR-seq mESC enhancer starr_13664 Neighboring gene VISTA enhancer mm39 Neighboring gene cyclin I Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93635715-93635902 Neighboring gene activated RNA polymerase II transcriptional coactivator p15 pseudogene Neighboring gene predicted gene, 42116 Neighboring gene STARR-positive B cell enhancer ABC_E2751 Neighboring gene CapStarr-seq enhancers MGSCv37_chr5:93695909-93696110 and MGSCv37_chr5:93696229-93696412 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93696423-93696610 Neighboring gene cyclin G2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC75610

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029363.1NP_083639.1  uncharacterized protein LOC75610

    See identical proteins and their annotated locations for NP_083639.1

    Status: VALIDATED

    Source sequence(s)
    AK008356, AK047232
    Consensus CDS
    CCDS57357.1
    UniProtKB/TrEMBL
    Q9D875
    Related
    ENSMUSP00000031330.5, ENSMUST00000031330.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    93354377..93361333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)