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Tex29 testis expressed 29 [ Mus musculus (house mouse) ]

Gene ID: 75528, updated on 5-Mar-2024

Summary

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Official Symbol
Tex29provided by MGI
Official Full Name
testis expressed 29provided by MGI
Primary source
MGI:MGI:1922778
See related
Ensembl:ENSMUSG00000031512 AllianceGenome:MGI:1922778
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700018L24Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in testis. Orthologous to human TEX29 (testis expressed 29). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 30.1) See more
Orthologs
human all
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Genomic context

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See Tex29 in Genome Data Viewer
Location:
8 A1.1; 8 5.73 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (11890488..11905761)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (11840487..11855761)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700128E19 gene Neighboring gene predicted gene 45420 Neighboring gene STARR-positive B cell enhancer ABC_E9719 Neighboring gene Rho guanine nucleotide exchange factor Neighboring gene NSA2 ribosome biogenesis homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_20727 Neighboring gene STARR-seq mESC enhancer starr_20728 Neighboring gene STARR-seq mESC enhancer starr_20729 Neighboring gene STARR-seq mESC enhancer starr_20730 Neighboring gene high mobility group box 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20731 Neighboring gene STARR-seq mESC enhancer starr_20732 Neighboring gene predicted gene, 33029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
testis-expressed protein 29
Names
testis-expressed sequence 29 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029326.1 → NP_083602.1  testis-expressed protein 29

    See identical proteins and their annotated locations for NP_083602.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049746
    Consensus CDS
    CCDS22100.1
    UniProtKB/Swiss-Prot
    Q9DA77
    Related
    ENSMUSP00000033909.8, ENSMUST00000033909.14
    Conserved Domains (1) summary
    pfam15839
    Location:20 → 88
    TEX29; Testis-expressed sequence 29 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    11890488..11905761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508920.3 → XP_006508983.1  testis-expressed protein 29 isoform X2

    See identical proteins and their annotated locations for XP_006508983.1

    UniProtKB/Swiss-Prot
    Q9DA77
    Conserved Domains (1) summary
    pfam15839
    Location:20 → 88
    TEX29; Testis-expressed sequence 29 protein

  2. XM_006508918.3 → XP_006508981.1  testis-expressed protein 29 isoform X1

    See identical proteins and their annotated locations for XP_006508981.1

    UniProtKB/TrEMBL
    A0A1B0GSS2
    Related
    ENSMUSP00000148049.2, ENSMUST00000209692.2
    Conserved Domains (1) summary
    pfam15839
    Location:38 → 106
    TEX29; Testis-expressed sequence 29 protein

  3. XM_006508919.3 → XP_006508982.1  testis-expressed protein 29 isoform X1

    See identical proteins and their annotated locations for XP_006508982.1

    UniProtKB/TrEMBL
    A0A1B0GSS2
    Conserved Domains (1) summary
    pfam15839
    Location:38 → 106
    TEX29; Testis-expressed sequence 29 protein

  4. XM_030243828.2 → XP_030099688.1  testis-expressed protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A1B0GSS2
    Conserved Domains (1) summary
    pfam15839
    Location:38 → 106
    TEX29; Testis-expressed sequence 29 protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DA77.1 GenPept UniProtKB/Swiss-Prot:Q9DA77

Gene LinkOut

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