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Tex48 testis expressed 48 [ Mus musculus (house mouse) ]

Gene ID: 75524, updated on 5-Mar-2024

Summary

Official Symbol
Tex48provided by MGI
Official Full Name
testis expressed 48provided by MGI
Primary source
MGI:MGI:1922774
See related
Ensembl:ENSMUSG00000058935 AllianceGenome:MGI:1922774
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
bM230C2.3; 1700018C11Rik
Summary
Is expressed in otic capsule and skeleton. Orthologous to human TEX48 (testis expressed 48). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 177.4) See more
Orthologs
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Genomic context

Location:
4 C1; 4 34.03 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (63525326..63540670, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (63607089..63622433, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 268 Neighboring gene predicted gene, 24448 Neighboring gene STARR-positive B cell enhancer mm9_chr4:63263195-63263495 Neighboring gene testis expressed 53 Neighboring gene predicted gene, 24234 Neighboring gene predicted gene 11482

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
testis-expressed protein 48

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356325.1NP_001343254.1  testis-expressed protein 48

    Status: VALIDATED

    Source sequence(s)
    AK006081, AL691484
    Consensus CDS
    CCDS18262.1
    UniProtKB/TrEMBL
    Q9DA81
    Related
    ENSMUSP00000099925.2, ENSMUST00000102861.8
  2. NM_029324.3NP_083600.1  testis-expressed protein 48

    See identical proteins and their annotated locations for NP_083600.1

    Status: VALIDATED

    Source sequence(s)
    AK006081, AL691484
    Consensus CDS
    CCDS18262.1
    UniProtKB/TrEMBL
    Q9DA81
    Related
    ENSMUSP00000099926.4, ENSMUST00000102862.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    63525326..63540670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)