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1700003F12Rik RIKEN cDNA 1700003F12 gene [ Mus musculus (house mouse) ]

Gene ID: 75480, updated on 5-Mar-2024

Summary

Official Symbol
1700003F12Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700003F12 geneprovided by MGI
Primary source
MGI:MGI:1922730
See related
Ensembl:ENSMUSG00000038523 AllianceGenome:MGI:1922730
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in brain; ovary; spleen; testis; and thyroid gland. Orthologous to human C20orf144 (chromosome 20 open reading frame 144). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 391.0) See more
Orthologs
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Genomic context

Location:
2 H1; 2 76.79 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (154390824..154391970)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (154548904..154550050)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1461 Neighboring gene STARR-seq mESC enhancer starr_06124 Neighboring gene predicted gene, 52564 Neighboring gene CBFA2/RUNX1 translocation partner 2 Neighboring gene STARR-seq mESC enhancer starr_06127 Neighboring gene zinc finger, FYVE domain containing 21 pseudogene Neighboring gene N-terminal EF-hand calcium binding protein 3 Neighboring gene actin-like 10 Neighboring gene STARR-positive B cell enhancer ABC_E816 Neighboring gene E2F transcription factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C20orf144 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029305.2NP_083581.1  uncharacterized protein C20orf144 homolog

    See identical proteins and their annotated locations for NP_083581.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ080431
    Consensus CDS
    CCDS16933.1
    UniProtKB/TrEMBL
    Q9DAQ3
    Related
    ENSMUSP00000035523.5, ENSMUST00000045116.11
    Conserved Domains (1) summary
    pfam15318
    Location:1185
    Bclt; Putative Bcl-2 like protein of testis

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    154390824..154391970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319305.3XP_017174794.1  uncharacterized protein C20orf144 homolog isoform X1

    UniProtKB/TrEMBL
    A2AKE5
    Related
    ENSMUSP00000105331.4, ENSMUST00000109709.4
    Conserved Domains (1) summary
    pfam15318
    Location:1202
    Bclt; Putative Bcl-2 like protein of testis