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4930539M17Rik RIKEN cDNA 4930539M17 gene [ Mus musculus (house mouse) ]

Gene ID: 75149, updated on 8-Feb-2024

Summary

Official Symbol
4930539M17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930539M17 geneprovided by MGI
Primary source
MGI:MGI:1922399
See related
Ensembl:ENSMUSG00000103116 AllianceGenome:MGI:1922399
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 1.9) See more
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Genomic context

See 4930539M17Rik in Genome Data Viewer
Location:
3; 3 A1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (9127024..9136136)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (9061964..9071076)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46832 Neighboring gene predicted gene, 54188 Neighboring gene STARR-seq mESC enhancer starr_06888 Neighboring gene STARR-seq mESC enhancer starr_06891 Neighboring gene STARR-seq mESC enhancer starr_06892 Neighboring gene STARR-seq mESC enhancer starr_06894 Neighboring gene STARR-seq mESC enhancer starr_06895 Neighboring gene STARR-seq mESC enhancer starr_06896 Neighboring gene predicted gene, 41996 Neighboring gene predicted gene, 33018

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040597.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC161056, BB615931
    Related
    ENSMUST00000194792.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    9127024..9136136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)