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4930545H06Rik RIKEN cDNA 4930545H06 gene [ Mus musculus (house mouse) ]

Gene ID: 75148, updated on 8-Feb-2024

Summary

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Official Symbol
4930545H06Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930545H06 geneprovided by MGI
Primary source
MGI:MGI:1922398
See related
Ensembl:ENSMUSG00000112157 AllianceGenome:MGI:1922398
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.2) See more
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Genomic context

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Location:
10; 10 B5.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (68154895..68156972, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (68319065..68321142, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5144 Neighboring gene rhotekin 2 Neighboring gene STARR-seq mESC enhancer starr_27014 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:67544592-67544803 Neighboring gene STARR-seq mESC enhancer starr_27016 Neighboring gene STARR-seq mESC enhancer starr_27019 Neighboring gene AT-rich interaction domain 5B Neighboring gene STARR-seq mESC enhancer starr_27023 Neighboring gene STARR-positive B cell enhancer ABC_E9344 Neighboring gene STARR-seq mESC enhancer starr_27025 Neighboring gene predicted gene, 51770 Neighboring gene STARR-seq mESC enhancer starr_27026 Neighboring gene STARR-positive B cell enhancer ABC_E8342 Neighboring gene STARR-positive B cell enhancer ABC_E3891 Neighboring gene STARR-positive B cell enhancer ABC_E5145 Neighboring gene STARR-seq mESC enhancer starr_27031 Neighboring gene STARR-seq mESC enhancer starr_27032 Neighboring gene STARR-seq mESC enhancer starr_27034 Neighboring gene STARR-positive B cell enhancer ABC_E10619 Neighboring gene STARR-positive B cell enhancer ABC_E8343 Neighboring gene STARR-positive B cell enhancer ABC_E10620 Neighboring gene STARR-seq mESC enhancer starr_27036 Neighboring gene STARR-seq mESC enhancer starr_27037 Neighboring gene STARR-seq mESC enhancer starr_27038 Neighboring gene STARR-seq mESC enhancer starr_27040 Neighboring gene STARR-positive B cell enhancer mm9_chr10:67818877-67819178 Neighboring gene predicted gene, 32748 Neighboring gene STARR-positive B cell enhancer ABC_E10621 Neighboring gene STARR-seq mESC enhancer starr_27041 Neighboring gene predicted gene, 40683 Neighboring gene ciliary associated calcium binding coiled-coil 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045357.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122293, AK016046
    Related
    ENSMUST00000218225.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    68154895..68156972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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