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4930506C21Rik RIKEN cDNA 4930506C21 gene [ Mus musculus (house mouse) ]

Gene ID: 75060, updated on 8-Feb-2024

Summary

Official Symbol
4930506C21Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930506C21 geneprovided by MGI
Primary source
MGI:MGI:1922310
See related
Ensembl:ENSMUSG00000087478 AllianceGenome:MGI:1922310
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 38.0), heart adult (RPKM 36.9) and 28 other tissues See more
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Genomic context

Location:
17 A1; 17 4.92 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (8512198..8529950, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (8293366..8311118, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41762 Neighboring gene C-C motif chemokine receptor 6 Neighboring gene predicted gene, 33799 Neighboring gene predicted gene 8465 Neighboring gene STARR-positive B cell enhancer ABC_E1188 Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:8503785-8503968 Neighboring gene SFT2 domain containing 1 Neighboring gene proline rich 18 Neighboring gene predicted gene, 46592 Neighboring gene protein FAM32A pseudogene Neighboring gene brachyury 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC164431, AK015714
    Related
    ENSMUST00000130639.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    8512198..8529950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)