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Samd13 sterile alpha motif domain containing 13 [ Mus musculus (house mouse) ]

Gene ID: 75015, updated on 5-Mar-2024

Summary

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Official Symbol
Samd13provided by MGI
Official Full Name
sterile alpha motif domain containing 13provided by MGI
Primary source
MGI:MGI:2686498
See related
Ensembl:ENSMUSG00000048652 Ensembl:ENSMUSG00000090202 AllianceGenome:MGI:2686498
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1652; 1700013A07Rik; 1700095G21Rik; 4930483N21Rik
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 13.7) See more
Orthologs
human all
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Genomic context

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Location:
3 H2; 3 72.28 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (146350944..146391555, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (146645189..146685892, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11229 Neighboring gene ribosome production factor 1 homolog Neighboring gene deoxyribonuclease II beta Neighboring gene STARR-seq mESC enhancer starr_09227 Neighboring gene urate oxidase Neighboring gene STARR-seq mESC enhancer starr_09228 Neighboring gene predicted gene 16325 Neighboring gene predicted gene, 40169 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146349571-146349754 Neighboring gene predicted gene, 36521 Neighboring gene high mobility group box 1 pseudogene Neighboring gene protein kinase, cAMP dependent, catalytic, beta Neighboring gene STARR-seq mESC enhancer starr_09230 Neighboring gene STARR-positive B cell enhancer ABC_E4605 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:146444299-146444452 Neighboring gene capping protein (actin filament) muscle Z-line, alpha 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Evidence Implicating CCNB1IP1, a RING Domain-Containing Protein Required for Meiotic Crossing Over in Mice, as an E3 SUMO Ligase. Strong ER, et al. Genes (Basel), 2010 Dec 2. PMID 21779533, Free PMC Article
  2. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
  3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 13; DnaJ domain-containing protein
Names
SAM domain-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368725.1 → NP_001355654.1  sterile alpha motif domain-containing protein 13 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114618
    Consensus CDS
    CCDS89700.1
    UniProtKB/Swiss-Prot
    D3YUG0
    Related
    ENSMUSP00000118934.2, ENSMUST00000147113.2
    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  2. NM_001368726.1 → NP_001355655.1  sterile alpha motif domain-containing protein 13 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC114618
    Consensus CDS
    CCDS89699.1
    UniProtKB/TrEMBL
    A0A0G2JGB1
    Related
    ENSMUSP00000143496.2, ENSMUST00000197989.2
    Conserved Domains (1) summary
    cd09583
    Location:9 → 77
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  3. NM_029144.5 → NP_083420.2  DnaJ domain-containing protein isoform 3

    See identical proteins and their annotated locations for NP_083420.2

    Status: VALIDATED

    Source sequence(s)
    AC114618
    Consensus CDS
    CCDS38667.1
    UniProtKB/TrEMBL
    Q80ZP0, Q9D5A2
    Related
    ENSMUSP00000051453.6, ENSMUST00000049703.6
    Conserved Domains (2) summary
    COG0484
    Location:2 → 67
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:3 → 66
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    146350944..146391555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252862.2 → XP_030108722.1  sterile alpha motif domain-containing protein 13 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JGB1
    Conserved Domains (1) summary
    cd09583
    Location:9 → 77
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  2. XM_030252861.2 → XP_030108721.1  sterile alpha motif domain-containing protein 13 isoform X2

    UniProtKB/Swiss-Prot
    D3YUG0
    Related
    ENSMUSP00000119608.2, ENSMUST00000125965.8
    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  3. XM_011240263.3 → XP_011238565.1  sterile alpha motif domain-containing protein 13 isoform X2

    See identical proteins and their annotated locations for XP_011238565.1

    UniProtKB/Swiss-Prot
    D3YUG0
    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  4. XM_011240264.2 → XP_011238566.1  sterile alpha motif domain-containing protein 13 isoform X2

    See identical proteins and their annotated locations for XP_011238566.1

    UniProtKB/Swiss-Prot
    D3YUG0
    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  5. XM_006502225.5 → XP_006502288.1  DnaJ domain-containing protein isoform X1

    See identical proteins and their annotated locations for XP_006502288.1

    UniProtKB/TrEMBL
    G5E8V6, Q9D5A2
    Related
    ENSMUSP00000114745.2, ENSMUST00000149825.2
    Conserved Domains (1) summary
    pfam00226
    Location:3 → 66
    DnaJ; DnaJ domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YUG0.1 GenPept UniProtKB/Swiss-Prot:D3YUG0

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