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Cylc2 cylicin, basic protein of sperm head cytoskeleton 2 [ Mus musculus (house mouse) ]

Gene ID: 74914, updated on 5-Mar-2024

Summary

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Official Symbol
Cylc2provided by MGI
Official Full Name
cylicin, basic protein of sperm head cytoskeleton 2provided by MGI
Primary source
MGI:MGI:1922164
See related
Ensembl:ENSMUSG00000039555 AllianceGenome:MGI:1922164
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930488P18Rik
Summary
Orthologous to human CYLC2 (cylicin 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 4.9) See more
Orthologs
human all
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Genomic context

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Location:
4 B1; 4 27.27 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (51216653..51250625)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (51216653..51250625)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42288 Neighboring gene predicted gene, 42287 Neighboring gene STARR-seq mESC enhancer starr_10195 Neighboring gene STARR-seq mESC enhancer starr_10196 Neighboring gene predicted gene 12460 Neighboring gene STARR-seq mESC enhancer starr_10197 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 4 Neighboring gene STARR-seq mESC enhancer starr_10198 Neighboring gene predicted gene, 23043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cylicin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427180.1 → NP_001414109.1  cylicin-2

    Status: VALIDATED

    Source sequence(s)
    AL732569, AL772238
    UniProtKB/TrEMBL
    A0A571BEE2

  2. NM_001427184.1 → NP_001414113.1  cylicin-2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL732569, AL772238
    Consensus CDS
    CCDS71386.1
    UniProtKB/TrEMBL
    B1AWN8, E9Q6B1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    51216653..51250625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253866.1 → XP_030109726.1  cylicin-2 isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:125 → 415
    PTZ00121; MAEBL; Provisional
    pfam15241
    Location:1 → 35
    Cylicin_N; Cylicin N-terminus

  2. XM_017320427.1 → XP_017175916.1  cylicin-2 isoform X1

    UniProtKB/TrEMBL
    A0A571BEE2
    Conserved Domains (2) summary
    PTZ00121
    Location:200 → 490
    PTZ00121; MAEBL; Provisional
    pfam15241
    Location:8 → 110
    Cylicin_N; Cylicin N-terminus

  3. XM_017320426.1 → XP_017175915.1  cylicin-2 isoform X1

    UniProtKB/TrEMBL
    A0A571BEE2
    Conserved Domains (2) summary
    PTZ00121
    Location:200 → 490
    PTZ00121; MAEBL; Provisional
    pfam15241
    Location:8 → 110
    Cylicin_N; Cylicin N-terminus

  4. XM_011250129.2 → XP_011248431.1  cylicin-2 isoform X3

    Conserved Domains (2) summary
    PTZ00121
    Location:82 → 360
    PTZ00121; MAEBL; Provisional
    pfam15241
    Location:8 → 110
    Cylicin_N; Cylicin N-terminus

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001162865.1: Suppressed sequence

    Description
    NM_001162865.1: This RefSeq was suppressed because it lacks polyA data, and hence 3' incomplete. RNA-seq and polyA-seq data suggest additional 3' UTR exons and several splice sites, so a new RefSeq (NM_001427184.1) was created.
Nucleotide Protein Strain
Heading Accession and Version

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