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Lrrc71 leucine rich repeat containing 71 [ Mus musculus (house mouse) ]

Gene ID: 74485, updated on 5-Mar-2024

Summary

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Official Symbol
Lrrc71provided by MGI
Official Full Name
leucine rich repeat containing 71provided by MGI
Primary source
MGI:MGI:1921735
See related
Ensembl:ENSMUSG00000023084 AllianceGenome:MGI:1921735
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4933430H15Rik
Summary
Orthologous to human LRRC71 (leucine rich repeat containing 71). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 32.9), lung adult (RPKM 8.3) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
3 F1; 3 38.46 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (87644227..87655930, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (87736923..87748623, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 11 Neighboring gene STARR-seq mESC enhancer starr_08161 Neighboring gene ribosomal protein S27 pseudogene Neighboring gene predicted gene 6570 Neighboring gene platelet endothelial aggregation receptor 1 Neighboring gene neurotrophic tyrosine kinase, receptor, type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Blastocyst genotyping for quality control of mouse mutant archives: an ethical and economical approach. Scavizzi F, et al. Transgenic Res, 2015 Oct. PMID 26178246, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 71
Names
leucine-rich repeat-containing protein C10orf92 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028971.1 → NP_083247.1  leucine-rich repeat-containing protein 71

    See identical proteins and their annotated locations for NP_083247.1

    Status: VALIDATED

    Source sequence(s)
    AC161454, AK016993, AK029938, BB614807
    Consensus CDS
    CCDS50946.1
    UniProtKB/Swiss-Prot
    Q8C0S9, Q9D3W5
    Related
    ENSMUSP00000023846.5, ENSMUST00000023846.11
    Conserved Domains (2) summary
    cd00116
    Location:149 → 308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:197 → 217
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    87644227..87655930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319777.3 → XP_017175266.1  leucine-rich repeat-containing protein 71 isoform X2

    Conserved Domains (2) summary
    sd00031
    Location:9 → 34
    LRR_1; leucine-rich repeat [structural motif]
    cl39015
    Location:8 → 93
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_011240257.4 → XP_011238559.1  leucine-rich repeat-containing protein 71 isoform X3

  3. XM_006502207.3 → XP_006502270.1  leucine-rich repeat-containing protein 71 isoform X1

    Conserved Domains (2) summary
    sd00033
    Location:197 → 217
    LRR_RI; leucine-rich repeat [structural motif]
    cl39015
    Location:149 → 308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D3W5.1 GenPept UniProtKB/Swiss-Prot:Q9D3W5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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