U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Epcip exosomal polycystin 1 interacting protein [ Mus musculus (house mouse) ]

Gene ID: 74387, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Epcipprovided by MGI
Official Full Name
exosomal polycystin 1 interacting proteinprovided by MGI
Primary source
MGI:MGI:1921637
See related
Ensembl:ENSMUSG00000039851 AllianceGenome:MGI:1921637
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4931406G06Rik; 4932438H23Rik
Summary
Is expressed in several structures, including genitourinary system; heart; nervous system; sensory organ; and thymus. Orthologous to human C21orf62 (chromosome 21 open reading frame 62). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 4.0), genital fat pad adult (RPKM 1.3) and 1 other tissue See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Epcip in Genome Data Viewer
Location:
16 C3.3; 16 52.35 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (90841534..90866040, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (91054877..91130103, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene synaptojanin 1 Neighboring gene RIKEN cDNA 4930404I05 gene Neighboring gene STARR-positive B cell enhancer mm9_chr16:91012148-91012449 Neighboring gene STARR-seq mESC enhancer starr_41471 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene STARR-seq mESC enhancer starr_41472 Neighboring gene STARR-positive B cell enhancer ABC_E8977 Neighboring gene H3.3 histone A, pseudogene 2 Neighboring gene VISTA enhancer mm817 Neighboring gene STARR-seq mESC enhancer starr_41473 Neighboring gene predicted gene, 41492 Neighboring gene predicted gene 9881

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A gene expression map of human chromosome 21 orthologues in the mouse. Gitton Y, et al. Nature, 2002 Dec 5. PMID 12466855
  2. Human chromosome 21 gene expression atlas in the mouse. Reymond A, et al. Nature, 2002 Dec 5. PMID 12466854
  3. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in mitocytosis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular exosome ISO
Inferred from Sequence Orthology
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in migrasome ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
polycystin-1-interacting protein 1
Names
uncharacterized protein C21orf62 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163695.2 → NP_001157167.2  polycystin-1-interacting protein 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC141885
    Related
    ENSMUSP00000109710.2, ENSMUST00000114076.2
    Conserved Domains (1) summary
    pfam15137
    Location:6 → 212
    DUF4571; Domain of unknown function (DUF4571)

  2. NM_028905.4 → NP_083181.2  polycystin-1-interacting protein 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC141885
    Related
    ENSMUSP00000040111.2, ENSMUST00000035689.8
    Conserved Domains (1) summary
    pfam15137
    Location:6 → 212
    DUF4571; Domain of unknown function (DUF4571)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    90841534..90866040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160168.1 → XP_036016061.1  polycystin-1-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q544A2, Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24 → 230
    DUF4571; Domain of unknown function (DUF4571)

  2. XM_036160167.1 → XP_036016060.1  polycystin-1-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q544A2, Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24 → 230
    DUF4571; Domain of unknown function (DUF4571)

  3. XM_030249315.2 → XP_030105175.1  polycystin-1-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q544A2, Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24 → 230
    DUF4571; Domain of unknown function (DUF4571)

  4. XM_030249314.2 → XP_030105174.1  polycystin-1-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q544A2, Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24 → 230
    DUF4571; Domain of unknown function (DUF4571)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4G1.1 GenPept UniProtKB/Swiss-Prot:Q9D4G1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous