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1700016H13Rik RIKEN cDNA 1700016H13 gene [ Mus musculus (house mouse) ]

Gene ID: 74218, updated on 5-Mar-2024

Summary

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Official Symbol
1700016H13Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700016H13 geneprovided by MGI
Primary source
MGI:MGI:1921468
See related
Ensembl:ENSMUSG00000029320 AllianceGenome:MGI:1921468
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C4orf36 (chromosome 4 open reading frame 36). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 109.5) See more
Orthologs
human all
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Genomic context

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Location:
5 E5; 5 50.45 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (103796449..103803898, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (103648583..103656032, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, non-receptor type 13 Neighboring gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6 Neighboring gene STARR-seq mESC enhancer starr_13780 Neighboring gene STARR-positive B cell enhancer ABC_E3590 Neighboring gene predicted gene, 42138 Neighboring gene predicted gene, 25721 Neighboring gene STARR-positive B cell enhancer mm9_chr5:104121192-104121493 Neighboring gene STARR-positive B cell enhancer ABC_E3591 Neighboring gene STARR-seq mESC enhancer starr_13785 Neighboring gene STARR-seq mESC enhancer starr_13786 Neighboring gene STARR-positive B cell enhancer ABC_E10335 Neighboring gene STARR-positive B cell enhancer ABC_E8066 Neighboring gene STARR-seq mESC enhancer starr_13791 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104155653-104155892 Neighboring gene STARR-seq mESC enhancer starr_13794 Neighboring gene AF4/FMR2 family, member 1 Neighboring gene STARR-positive B cell enhancer ABC_E2755 Neighboring gene STARR-positive B cell enhancer ABC_E9258 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104185304-104185591 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:104189527-104189796 Neighboring gene STARR-seq mESC enhancer starr_13808

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf36 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163550.1 → NP_001157022.1  uncharacterized protein C4orf36 homolog

    See identical proteins and their annotated locations for NP_001157022.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC161169
    Consensus CDS
    CCDS51575.1
    UniProtKB/Swiss-Prot
    Q9DAA3
    Related
    ENSMUSP00000113969.2, ENSMUST00000120108.8
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  2. NM_028824.1 → NP_083100.1  uncharacterized protein C4orf36 homolog

    See identical proteins and their annotated locations for NP_083100.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK006033, BC049644
    Consensus CDS
    CCDS51575.1
    UniProtKB/Swiss-Prot
    Q9DAA3
    Related
    ENSMUSP00000114503.2, ENSMUST00000134926.8
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    103796449..103803898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535261.4 → XP_006535324.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_006535324.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Related
    ENSMUSP00000113935.2, ENSMUST00000119824.8
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  2. XM_011249582.2 → XP_011247884.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_011247884.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  3. XM_006535258.1 → XP_006535321.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_006535321.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Related
    ENSMUSP00000113469.2, ENSMUST00000120688.6
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  4. XM_006535260.1 → XP_006535323.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_006535323.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  5. XM_017321121.1 → XP_017176610.1  uncharacterized protein C4orf36 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  6. XM_011249581.1 → XP_011247883.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_011247883.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)

  7. XM_011249580.1 → XP_011247882.1  uncharacterized protein C4orf36 homolog isoform X1

    See identical proteins and their annotated locations for XP_011247882.1

    UniProtKB/Swiss-Prot
    Q9DAA3
    Conserved Domains (1) summary
    pfam15022
    Location:1 → 117
    DUF4522; Protein of unknown function (DUF4522)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DAA3.1 GenPept UniProtKB/Swiss-Prot:Q9DAA3

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