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Snhg6 small nucleolar RNA host gene 6 [ Mus musculus (house mouse) ]

Gene ID: 73824, updated on 8-Feb-2024

Summary

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Official Symbol
Snhg6provided by MGI
Official Full Name
small nucleolar RNA host gene 6provided by MGI
Primary source
MGI:MGI:1921074
See related
Ensembl:ENSMUSG00000098234 AllianceGenome:MGI:1921074
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110008H02Rik
Summary
Orthologous to human SNHG6 (small nucleolar RNA host gene 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 32.6), CNS E18 (RPKM 29.1) and 28 other tissues See more
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Genomic context

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Location:
1 A2; 1 2.22 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (10012250..10014343, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (9942025..9944118, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 3 Neighboring gene mitochondrial ribosomal protein S36 pseudogene Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E4304 Neighboring gene small nucleolar RNA, C/D box 87 Neighboring gene transcription factor 24 Neighboring gene protein phosphatase 1, regulatory subunit 42 Neighboring gene STARR-seq mESC enhancer starr_00178 Neighboring gene STARR-seq mESC enhancer starr_00179 Neighboring gene predicted gene, 24674

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. LncRNA Snhg6 regulates the differentiation of MDSCs by regulating the ubiquitination of EZH2. Lu W, et al. J Hematol Oncol, 2021 Nov 18. PMID 34794493, Free PMC Article
  2. Long noncoding RNA SNHG6 contributes to ventricular septal defect formation via negative regulation of miR-101 and activation of Wnt/β-catenin pathway. Jiang Y, et al. Pharmazie, 2019 Jan 1. PMID 30782246
  3. Long non-coding RNAs and small nucleolar RNA host gene 6 contribute to the depression-like behavior of hypothyroid mice by promoting methylation of the brain-derived neuropathic factor promoter that is mediated by DNA methyltransferase 1. Yang H, et al. J Physiol Pharmacol, 2022 Oct. PMID 36942812
  4. LncRNA SNHG6 functions as a ceRNA to regulate neuronal cell apoptosis by modulating miR-181c-5p/BIM signalling in ischaemic stroke. Zhang X, et al. J Cell Mol Med, 2019 Sep. PMID 31334597, Free PMC Article
  5. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Long non-coding RNAs and small nucleolar RNA host gene 6 contribute to the depression-like behavior of hypothyroid mice by promoting methylation of the brain-derived neuropathic factor promoter that is mediated by DNA methyltransferase 1.
    Title: Long non-coding RNAs and small nucleolar RNA host gene 6 contribute to the depression-like behavior of hypothyroid mice by promoting methylation of the brain-derived neuropathic factor promoter that is mediated by DNA methyltransferase 1.
  2. LncRNA Snhg6 regulates the differentiation of MDSCs by regulating the ubiquitination of EZH2.
    Title: LncRNA Snhg6 regulates the differentiation of MDSCs by regulating the ubiquitination of EZH2.
  3. LncRNA SNHG6 functions as a ceRNA to regulate neuronal cell apoptosis by modulating miR-181c-5p/BIM signalling in ischaemic stroke.
    Title: LncRNA SNHG6 functions as a ceRNA to regulate neuronal cell apoptosis by modulating miR-181c-5p/BIM signalling in ischaemic stroke.
  4. Our study reveals that SNHG6 may contribute to ventricular septal defect formation via negative regulation of miR-101 and activation of Wnt/beta-catenin pathway
    Title: Long noncoding RNA SNHG6 contributes to ventricular septal defect formation via negative regulation of miR-101 and activation of Wnt/β-catenin pathway.
Submit: New GeneRIF Correction

General gene information

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Other Names

  • small nucleolar RNA host gene (non-protein coding) 6

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024067.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK003573
    Related
    ENSMUST00000246859.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    10012250..10014343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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