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2410004P03Rik RIKEN cDNA 2410004P03 gene [ Mus musculus (house mouse) ]

Gene ID: 73667, updated on 5-Mar-2024

Summary

Official Symbol
2410004P03Rikprovided by MGI
Official Full Name
RIKEN cDNA 2410004P03 geneprovided by MGI
Primary source
MGI:MGI:1920917
See related
Ensembl:ENSMUSG00000071398 AllianceGenome:MGI:1920917
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C2orf50 (chromosome 2 open reading frame 50). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary adult (RPKM 6.4), lung adult (RPKM 5.4) and 6 other tissues See more
Orthologs
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Genomic context

Location:
12 A1.1; 12 8.04 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (17054958..17061759, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (17004958..17011758, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene Rho-associated coiled-coil containing protein kinase 2 Neighboring gene predicted gene, 22303 Neighboring gene STARR-seq mESC enhancer starr_31651 Neighboring gene STARR-positive B cell enhancer ABC_E7121 Neighboring gene solute carrier family 66 member 3 Neighboring gene STARR-positive B cell enhancer ABC_E11504 Neighboring gene STARR-seq mESC enhancer starr_31652 Neighboring gene STARR-seq mESC enhancer starr_31653 Neighboring gene STARR-seq mESC enhancer starr_31654 Neighboring gene potassium voltage-gated channel, subfamily F, member 1 Neighboring gene predicted gene, 36568

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C2orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201332.2NP_001188261.1  uncharacterized protein C2orf50 homolog isoform 1

    See identical proteins and their annotated locations for NP_001188261.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter isoform (1).
    Source sequence(s)
    AC159312
    Consensus CDS
    CCDS49033.1
    UniProtKB/TrEMBL
    D3Z430
    Related
    ENSMUSP00000093503.3, ENSMUST00000095823.9
    Conserved Domains (1) summary
    pfam14945
    Location:5396
    LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein
  2. NM_001201333.2NP_001188262.1  uncharacterized protein C2orf50 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon that results in a frameshift in the central and 3' coding regions, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is longer than isoform 1.
    Source sequence(s)
    AC159312
    Consensus CDS
    CCDS79107.1
    UniProtKB/TrEMBL
    A0A087WQY2
    Related
    ENSMUSP00000140390.2, ENSMUST00000190691.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    17054958..17061759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157628.1XP_036013521.1  uncharacterized protein C2orf50 homolog isoform X2

    Conserved Domains (1) summary
    pfam14945
    Location:5381
    LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein
  2. XM_006515231.4XP_006515294.1  uncharacterized protein C2orf50 homolog isoform X1

    See identical proteins and their annotated locations for XP_006515294.1

    UniProtKB/TrEMBL
    D3Z430
    Conserved Domains (1) summary
    pfam14945
    Location:5396
    LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein