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Chct1 CHD1 helical C-terminal domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 73634, updated on 5-Mar-2024

Summary

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Official Symbol
Chct1provided by MGI
Official Full Name
CHD1 helical C-terminal domain containing 1provided by MGI
Primary source
MGI:MGI:1920884
See related
Ensembl:ENSMUSG00000018479 AllianceGenome:MGI:1920884
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700125H20Rik
Summary
Is expressed in testis. Orthologous to human C17orf64 (chromosome 17 open reading frame 64). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 2.2) and adrenal adult (RPKM 0.2) See more
Orthologs
human all
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Genomic context

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See Chct1 in Genome Data Viewer
Location:
11 C; 11 51.34 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (85031023..85072042)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (85140173..85181154)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene ribosomal protein L13, pseudogene 1 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30233 Neighboring gene STARR-positive B cell enhancer ABC_E7034 Neighboring gene STARR-seq mESC enhancer starr_30234 Neighboring gene predicted gene, 23506 Neighboring gene amyloid beta precursor protein binding protein 2 Neighboring gene predicted gene, 51947 Neighboring gene predicted gene, 38935

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells. Dai Y, et al. Mol Biol Rep, 2021 Feb. PMID 33566224
  2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  5. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells.
    Title: Expression profile analysis of a new testis-specifically expressed gene C17ORF64 and its association with cell apoptosis in MCF-7 cells.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CHD1 helical C-terminal domain containing protein 1
Names
uncharacterized protein C17orf64 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028589.1 → NP_082865.1  CHD1 helical C-terminal domain containing protein 1

    See identical proteins and their annotated locations for NP_082865.1

    Status: VALIDATED

    Source sequence(s)
    BB019433, BC048674
    Consensus CDS
    CCDS48872.1
    UniProtKB/Swiss-Prot
    Q5SX10, Q80ZN8, Q9D979
    Related
    ENSMUSP00000018623.4, ENSMUST00000018623.4
    Conserved Domains (1) summary
    pfam13907
    Location:50 → 132
    DUF4208; Domain of unknown function (DUF4208)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    85031023..85072042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246376.2 → XP_030102236.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

  2. XM_036157025.1 → XP_036012918.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

  3. XM_011249281.4 → XP_011247583.1  CHD1 helical C-terminal domain containing protein 1 isoform X6

    See identical proteins and their annotated locations for XP_011247583.1

    Conserved Domains (1) summary
    pfam13907
    Location:45 → 126
    DUF4208; Domain of unknown function (DUF4208)

  4. XM_006534344.5 → XP_006534407.1  CHD1 helical C-terminal domain containing protein 1 isoform X7

    See identical proteins and their annotated locations for XP_006534407.1

    UniProtKB/Swiss-Prot
    Q9D979
    Related
    ENSMUSP00000098248.2, ENSMUST00000100681.8

  5. XM_006534339.5 → XP_006534402.1  CHD1 helical C-terminal domain containing protein 1 isoform X1

    Conserved Domains (1) summary
    pfam13907
    Location:81 → 162
    DUF4208; Domain of unknown function (DUF4208)

  6. XM_006534340.5 → XP_006534403.1  CHD1 helical C-terminal domain containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam13907
    Location:71 → 153
    DUF4208; Domain of unknown function (DUF4208)

  7. XM_006534341.5 → XP_006534404.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam13907
    Location:81 → 162
    DUF4208; Domain of unknown function (DUF4208)

  8. XM_006534342.5 → XP_006534405.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

    Conserved Domains (1) summary
    pfam13907
    Location:60 → 141
    DUF4208; Domain of unknown function (DUF4208)

  9. XM_030246375.2 → XP_030102235.1  CHD1 helical C-terminal domain containing protein 1 isoform X5

    Conserved Domains (1) summary
    pfam13907
    Location:50 → 132
    DUF4208; Domain of unknown function (DUF4208)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D979.3 GenPept UniProtKB/Swiss-Prot:Q9D979

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