U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cimip4 ciliary microtubule inner protein 4 [ Mus musculus (house mouse) ]

Gene ID: 73376, updated on 21-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Cimip4provided by MGI
Official Full Name
ciliary microtubule inner protein 4provided by MGI
Primary source
MGI:MGI:1920626
See related
Ensembl:ENSMUSG00000062154 AllianceGenome:MGI:1920626
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ean57; Tex33; 1700061J05Rik
Summary
Orthologous to human TEX33 (testis expressed 33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 328.3) See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15 E1; 15 37.45 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (78262600..78280112, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (78378400..78395912, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene microRNA 7676-1 Neighboring gene colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage) Neighboring gene colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) Neighboring gene microRNA 7676-2 Neighboring gene STARR-seq mESC enhancer starr_39143 Neighboring gene thiosulfate sulfurtransferase, mitochondrial Neighboring gene predicted gene, 52185 Neighboring gene mercaptopyruvate sulfurtransferase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Spermatogenesis is normal in Tex33 knockout mice. Zhu Z, et al. PeerJ, 2020. PMID 32821546, Free PMC Article
  2. Testis-expressed protein 33 is not essential for spermiogenesis and fertility in mice. Xia M, et al. Mol Med Rep, 2021 May. PMID 33760102, Free PMC Article
  3. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
  4. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
  5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC130090

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
located_in sperm flagellum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ciliary microtubule inner protein 4
Names
protein EAN57
testis expressed 33
testis-expressed protein 33
testis-expressed sequence 33 protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163612.2 → NP_001157084.1  ciliary microtubule inner protein 4 isoform 1

    See identical proteins and their annotated locations for NP_001157084.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same isoform (1).
    Source sequence(s)
    AK006856, BY105066, CJ047876
    Consensus CDS
    CCDS49665.1
    UniProtKB/Swiss-Prot
    Q9D9J2
    UniProtKB/TrEMBL
    Q3KNN2
    Related
    ENSMUSP00000073984.8, ENSMUST00000074380.14
    Conserved Domains (1) summary
    pfam15400
    Location:128 → 265
    TEX33; Testis-expressed sequence 33 protein family

  2. NM_001163613.1 → NP_001157085.1  ciliary microtubule inner protein 4 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AL583893
    Consensus CDS
    CCDS49664.1
    UniProtKB/TrEMBL
    E9QA37
    Related
    ENSMUSP00000130849.2, ENSMUST00000169575.2
    Conserved Domains (1) summary
    pfam15400
    Location:103 → 240
    TEX33; Testis-expressed sequence 33 protein family

  3. NM_028522.1 → NP_082798.1  ciliary microtubule inner protein 4 isoform 1

    See identical proteins and their annotated locations for NP_082798.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
    Source sequence(s)
    AK006856, CJ047876
    Consensus CDS
    CCDS49665.1
    UniProtKB/Swiss-Prot
    Q9D9J2
    UniProtKB/TrEMBL
    Q3KNN2
    Related
    ENSMUSP00000133264.2, ENSMUST00000165170.8
    Conserved Domains (1) summary
    pfam15400
    Location:128 → 265
    TEX33; Testis-expressed sequence 33 protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    78262600..78280112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9J2.1 GenPept UniProtKB/Swiss-Prot:Q9D9J2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous