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1700034J05Rik RIKEN cDNA 1700034J05 gene [ Mus musculus (house mouse) ]

Gene ID: 73344, updated on 21-Apr-2024

Summary

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Official Symbol
1700034J05Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700034J05 geneprovided by MGI
Primary source
MGI:MGI:1920594
See related
Ensembl:ENSMUSG00000040163 AllianceGenome:MGI:1920594
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C12orf71 (chromosome 12 open reading frame 71). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 40.0) See more
Orthologs
human all
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Genomic context

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Location:
6 G3; 6 77.7 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146852799..146855937, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (146951301..146954439, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17808 Neighboring gene STARR-seq mESC enhancer starr_17809 Neighboring gene basic helix-loop-helix ARNT like 2 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene STARR-positive B cell enhancer mm9_chr6:146842338-146842638 Neighboring gene PTPRF interacting protein, binding protein 1 (liprin beta 1) Neighboring gene predicted gene, 35876 Neighboring gene RAB15 effector protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C12orf71 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164236.1 → NP_001157708.1  uncharacterized protein C12orf71 homolog isoform 2

    See identical proteins and their annotated locations for NP_001157708.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks one internal residue, compared to isoform 1.
    Source sequence(s)
    AK076643, BB573720, BC052362
    Consensus CDS
    CCDS51956.1
    UniProtKB/Swiss-Prot
    Q80W69
    Related
    ENSMUSP00000107249.2, ENSMUST00000111622.2
    Conserved Domains (1) summary
    pfam15480
    Location:19 → 300
    DUF4640; Domain of unknown function (DUF4640)

  2. NM_028509.1 → NP_082785.1  uncharacterized protein C12orf71 homolog isoform 1

    See identical proteins and their annotated locations for NP_082785.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BB573720, BC052362
    Consensus CDS
    CCDS51957.1
    UniProtKB/Swiss-Prot
    Q80W69, Q8C629, Q8CDR6, Q9D9Q1
    Related
    ENSMUSP00000043802.9, ENSMUST00000036592.15
    Conserved Domains (1) summary
    pfam15480
    Location:19 → 301
    DUF4640; Domain of unknown function (DUF4640)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    146852799..146855937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036152355.1 → XP_036008248.1  uncharacterized protein C12orf71 homolog isoform X8

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 261
    DUF4640; Domain of unknown function (DUF4640)

  2. XM_036152356.1 → XP_036008249.1  uncharacterized protein C12orf71 homolog isoform X9

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 219
    DUF4640; Domain of unknown function (DUF4640)

  3. XM_036152353.1 → XP_036008246.1  uncharacterized protein C12orf71 homolog isoform X8

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 261
    DUF4640; Domain of unknown function (DUF4640)

  4. XM_030255626.1 → XP_030111486.1  uncharacterized protein C12orf71 homolog isoform X6

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 300
    DUF4640; Domain of unknown function (DUF4640)

  5. XM_006507112.4 → XP_006507175.1  uncharacterized protein C12orf71 homolog isoform X4

    See identical proteins and their annotated locations for XP_006507175.1

    UniProtKB/Swiss-Prot
    Q80W69, Q8C629, Q8CDR6, Q9D9Q1
    Conserved Domains (1) summary
    pfam15480
    Location:19 → 301
    DUF4640; Domain of unknown function (DUF4640)

  6. XM_036152352.1 → XP_036008245.1  uncharacterized protein C12orf71 homolog isoform X8

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 261
    DUF4640; Domain of unknown function (DUF4640)

  7. XM_017321776.2 → XP_017177265.1  uncharacterized protein C12orf71 homolog isoform X4

    UniProtKB/Swiss-Prot
    Q80W69, Q8C629, Q8CDR6, Q9D9Q1
    Conserved Domains (1) summary
    pfam15480
    Location:19 → 301
    DUF4640; Domain of unknown function (DUF4640)

  8. XM_036152351.1 → XP_036008244.1  uncharacterized protein C12orf71 homolog isoform X8

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 261
    DUF4640; Domain of unknown function (DUF4640)

  9. XM_036152349.1 → XP_036008242.1  uncharacterized protein C12orf71 homolog isoform X6

    Conserved Domains (1) summary
    pfam15480
    Location:19 → 300
    DUF4640; Domain of unknown function (DUF4640)

  10. XM_011241632.3 → XP_011239934.1  uncharacterized protein C12orf71 homolog isoform X4

    See identical proteins and their annotated locations for XP_011239934.1

    UniProtKB/Swiss-Prot
    Q80W69, Q8C629, Q8CDR6, Q9D9Q1
    Conserved Domains (1) summary
    pfam15480
    Location:19 → 301
    DUF4640; Domain of unknown function (DUF4640)

  11. XM_017321777.2 → XP_017177266.1  uncharacterized protein C12orf71 homolog isoform X5

    Conserved Domains (1) summary
    pfam15480
    Location:59 → 301
    DUF4640; Domain of unknown function (DUF4640)

  12. XM_017321775.2 → XP_017177264.1  uncharacterized protein C12orf71 homolog isoform X3

    Conserved Domains (1) summary
    pfam15480
    Location:59 → 302
    DUF4640; Domain of unknown function (DUF4640)

  13. XM_017321774.2 → XP_017177263.1  uncharacterized protein C12orf71 homolog isoform X2

    Conserved Domains (1) summary
    pfam15480
    Location:59 → 340
    DUF4640; Domain of unknown function (DUF4640)

  14. XM_017321773.2 → XP_017177262.1  uncharacterized protein C12orf71 homolog isoform X1

    Conserved Domains (1) summary
    pfam15480
    Location:59 → 341
    DUF4640; Domain of unknown function (DUF4640)

  15. XM_036152350.1 → XP_036008243.1  uncharacterized protein C12orf71 homolog isoform X7

    Conserved Domains (1) summary
    pfam15480
    Location:59 → 259
    DUF4640; Domain of unknown function (DUF4640)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80W69.1 GenPept UniProtKB/Swiss-Prot:Q80W69

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