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TDRG1 testis development related 1 [ Homo sapiens (human) ]

Gene ID: 732253, updated on 5-Mar-2024

Summary

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Official Symbol
TDRG1provided by HGNC
Official Full Name
testis development related 1provided by HGNC
Primary source
HGNC:HGNC:43642
See related
Ensembl:ENSG00000204091 MIM:615676; AllianceGenome:HGNC:43642
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00532; lincRNA-NR_024015
Summary
Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 38.5) See more
Orthologs
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Genomic context

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Location:
6p21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (40378337..40379893)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (40206234..40207790)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (40346076..40347632)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:40254197-40254754 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:40272571-40272754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40275763-40276330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40276331-40276897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40289806-40290328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40297426-40298064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40298065-40298703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40311845-40312560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40313277-40313990 Neighboring gene long intergenic non-protein coding RNA 951 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:40327493-40328118 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:40346056-40347255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40377247-40377748 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40386520-40387156 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40387157-40387792 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40387793-40388428 Neighboring gene RNA, U6 small nuclear 250, pseudogene Neighboring gene leucine rich repeat and fibronectin type III domain containing 2 Neighboring gene uncharacterized LOC105379699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40477543-40478043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA TDRG1 aggravates lung cancer stemness by binding to Sox2 mRNA. Lu Y, et al. Environ Toxicol, 2023 Mar. PMID 36444968
  2. The rs8506 TT Genotype in lincRNA-NR_024015 Contributes to the Risk of Sepsis in a Southern Chinese Child Population. Li J, et al. Front Public Health, 2022. PMID 35910890, Free PMC Article
  3. Long non-coding RNA TDRG1 facilitates cell proliferation, migration and invasion in breast cancer via targeting miR-214-5p/CLIC4 axis. Lv Y, et al. Cancer Biol Ther, 2021 Mar 4. PMID 33822672, Free PMC Article
  4. Testis developmental related gene 1 (TDRG1) encodes a progressive motility-associated protein in human spermatozoa. Chen H, et al. Hum Reprod, 2021 Jan 25. PMID 33279973
  5. LncRNA TDRG1 promotes the metastasis of NSCLC cell through regulating miR-873-5p/ZEB1 axis. Hu X, et al. J Cell Biochem, 2021 Sep. PMID 31742752

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Analysis of Correlation Between LncRNA TDRG1 Expression and its Prognosis in Cervical Carcinoma Tissues.
    Title: Analysis of Correlation Between LncRNA TDRG1 Expression and its Prognosis in Cervical Carcinoma Tissues.
  2. Long non-coding RNA TDRG1 aggravates lung cancer stemness by binding to Sox2 mRNA.
    Title: Long non-coding RNA TDRG1 aggravates lung cancer stemness by binding to Sox2 mRNA.
  3. LncRNA TDRG1 promotes the metastasis of NSCLC cell through regulating miR-873-5p/ZEB1 axis.
    Title: LncRNA TDRG1 promotes the metastasis of NSCLC cell through regulating miR-873-5p/ZEB1 axis.
  4. The rs8506 TT Genotype in lincRNA-NR_024015 Contributes to the Risk of Sepsis in a Southern Chinese Child Population.
    Title: The rs8506 TT Genotype in lincRNA-NR_024015 Contributes to the Risk of Sepsis in a Southern Chinese Child Population.
  5. Long Noncoding RNAs Testis Development Related Gene 1 Aggravates Transforming Growth Factor-beta1-Induced Fibrogenesis and Inflammatory Response of Cardiac Fibroblasts Via miR-605-3p/Tumor Necrosis Factor Receptor Superfamily-21 Axis.
    Title: Long Noncoding RNAs Testis Development Related Gene 1 Aggravates Transforming Growth Factor-β1-Induced Fibrogenesis and Inflammatory Response of Cardiac Fibroblasts Via miR-605-3p/Tumor Necrosis Factor Receptor Superfamily-21 Axis.
  6. Long non-coding RNA TDRG1 facilitates cell proliferation, migration and invasion in breast cancer via targeting miR-214-5p/CLIC4 axis.
    Title: Long non-coding RNA TDRG1 facilitates cell proliferation, migration and invasion in breast cancer via targeting miR-214-5p/CLIC4 axis.
  7. Testis developmental related gene 1 (TDRG1) encodes a progressive motility-associated protein in human spermatozoa.
    Title: Testis developmental related gene 1 (TDRG1) encodes a progressive motility-associated protein in human spermatozoa.
  8. LncRNA TDRG1 promotes the proliferation, migration, and invasion of cervical cancer cells by sponging miR-214-5p to target SOX4.
    Title: LncRNA TDRG1 promotes the proliferation, migration, and invasion of cervical cancer cells by sponging miR-214-5p to target SOX4.
  9. LncRNA TDRG1/miR-214-5p axis affects preeclampsia by modulating trophoblast cells.
    Title: LncRNA TDRG1/miR-214-5p axis affects preeclampsia by modulating trophoblast cells.
  10. LncRNA TDRG1 functions as an oncogene in cervical cancer through sponging miR-330-5p to modulate ELK1 expression.
    Title: LncRNA TDRG1 functions as an oncogene in cervical cancer through sponging miR-330-5p to modulate ELK1 expression.
Submit: New GeneRIF Correction See all GeneRIFs (19)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Other Names

  • long intergenic non-protein coding RNA 532
  • testis development related 1 (non-protein coding)
  • testis development related gene 1
  • testis development related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000373170.2

  2. NR_160959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000653048.1

  3. NR_160960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000448433.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    40378337..40379893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    40206234..40207790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001359094.1: Suppressed sequence

    Description
    NM_001359094.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_001359095.1: Suppressed sequence

    Description
    NM_001359095.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_001359096.1: Suppressed sequence

    Description
    NM_001359096.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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