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UBBP1 ubiquitin B pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 7315, updated on 10-Oct-2023

Summary

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Official Symbol
UBBP1provided by HGNC
Official Full Name
ubiquitin B pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:12464
See related
AllianceGenome:HGNC:12464
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (136329300..136330012, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (136773866..136774578, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (137086870..137087582, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11985 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16584 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16585 Neighboring gene C-X-C motif chemokine receptor 4 Neighboring gene heterogeneous nuclear ribonucleoprotein K pseudogene 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:136993310-136994509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16586 Neighboring gene Sharpr-MPRA regulatory region 14513 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137001246-137001746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137001747-137002247 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137039837-137040338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137165304-137165804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137165805-137166305 Neighboring gene RN7SK pseudogene 141 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:137240685-137240943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16591 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:137267551-137268375 Neighboring gene NANOG hESC enhancer GRCh37_chr2:137275190-137275696 Neighboring gene MPRA-validated peak3883 silencer Neighboring gene uncharacterized LOC105373633 Neighboring gene structural maintenance of chromosomes 4 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human ubiquitin gene family: structure of a gene and pseudogenes from the Ub B subfamily. Baker RT, et al. Nucleic Acids Res, 1987 Jan 26. PMID 3029682, Free PMC Article
  2. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. Webb GC, et al. Am J Hum Genet, 1990 Feb. PMID 2154095, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002284.4 

    Range
    101..813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    136329300..136330012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    136773866..136774578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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