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Mir100hg Mir100 Mirlet7a-2 Mir125b-1 cluster host gene [ Mus musculus (house mouse) ]

Gene ID: 73144, updated on 5-Mar-2024

Summary

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Official Symbol
Mir100hgprovided by MGI
Official Full Name
Mir100 Mirlet7a-2 Mir125b-1 cluster host geneprovided by MGI
Primary source
MGI:MGI:1920394
See related
Ensembl:ENSMUSG00000074415 AllianceGenome:MGI:1920394
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D3Mgi9; 2610203C20Rik; 3110039I08Rik; D230004N17Rik
Summary
Is expressed in telencephalon. Orthologous to human MIR100HG (mir-100-let-7a-2-mir-125b-1 cluster host gene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E14 (RPKM 48.2), whole brain E14.5 (RPKM 42.4) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Mir100hg in Genome Data Viewer
Location:
9 A5.1; 9 23.32 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (41287822..41526481)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (41376526..41615185)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700063D05 gene Neighboring gene STARR-seq mESC enhancer starr_23877 Neighboring gene STARR-seq mESC enhancer starr_23879 Neighboring gene STARR-seq mESC enhancer starr_23880 Neighboring gene VISTA enhancer mm1486 Neighboring gene predicted gene, 25401 Neighboring gene STARR-seq mESC enhancer starr_23882 Neighboring gene microRNA let7a-2 Neighboring gene microRNA 100 Neighboring gene predicted gene, 51670 Neighboring gene predicted gene, 51735 Neighboring gene microRNA 125b-1 Neighboring gene STARR-seq mESC enhancer starr_23884 Neighboring gene predicted gene, 35835 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_23885 Neighboring gene VISTA enhancer mm1608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Progressive dopaminergic cell loss with unilateral-to-bilateral progression in a genetic model of Parkinson disease. Rousseaux MW, et al. Proc Natl Acad Sci U S A, 2012 Sep 25. PMID 23019375, Free PMC Article
  2. Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Yang J, et al. Front Genet, 2022. PMID 36482889, Free PMC Article
  3. A screen for downstream effectors of Neurogenin2 in the embryonic neocortex. Mattar P, et al. Dev Biol, 2004 Sep 15. PMID 15328020
  4. Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. Ling KH, et al. Genome Biol, 2009. PMID 19799774, Free PMC Article
  5. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Exosomal lncRNA Mir100hg derived from cancer stem cells enhance glycolysis and promote metastasis of lung adenocarcinoma through mircroRNA-15a-5p/31-5p.
    Title: Exosomal lncRNA Mir100hg derived from cancer stem cells enhance glycolysis and promote metastasis of lung adenocarcinoma through mircroRNA-15a-5p/31-5p.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Other Names

  • mir-100-let-7a-2 cluster host

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015483.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) has multiple differences, compared to variant 1.
    Source sequence(s)
    AK034222, BB871953, BE944930, CT025619
    Related
    ENSMUST00000246086.1

  2. NR_040725.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two alternate 3' exons and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AK014147, BB625832, CT009696
    Related
    ENSMUST00000190109.2

  3. NR_131928.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is a non-coding transcript.
    Source sequence(s)
    AK014147, AW491891, BB625832
    Related
    ENSMUST00000188945.7

  4. NR_131929.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate 3' exons and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    BB625832, CT009696
    Related
    ENSMUST00000187345.7

  5. NR_131930.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has multiple differences, compared to variant 1.
    Source sequence(s)
    AK084170, BE947288, BM936455, CT009696, CT025619
    Related
    ENSMUST00000181814.3

  6. NR_131931.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) has multiple differences, compared to variant 1.
    Source sequence(s)
    BE944930, BM936455, CT009696, CT025619

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    41287822..41526481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033153.1: Suppressed sequence

    Description
    NM_001033153.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.