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LINC02447 long intergenic non-protein coding RNA 2447 [ Homo sapiens (human) ]

Gene ID: 730971, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02447provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2447provided by HGNC
Primary source
HGNC:HGNC:53379
See related
AllianceGenome:HGNC:53379
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4p16.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (7097424..7103376, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (7069308..7075259, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (7099151..7105103, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100129931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21273 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7048917-7049418 Neighboring gene uncharacterized LOC105374368 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:7067016-7067117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15249 Neighboring gene uncharacterized LOC105374370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21274 Neighboring gene transcriptional adaptor 2B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15250 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15251 Neighboring gene GrpE like 1, mitochondrial Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7137065-7137667 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:7140699-7141354 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:7141355-7142009 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7151654-7152154 Neighboring gene RN7SK pseudogene 36 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7158079-7159057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7162453-7162954 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7162955-7163454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7166520-7167020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7167021-7167521 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:7172434-7173633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7240587-7241086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7246400-7246900 Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene uncharacterized LOC105374371 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:7258897-7259058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:7259549-7260049

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ36777

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027441.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097382

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    7097424..7103376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    7069308..7075259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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