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RPSAP19 ribosomal protein SA pseudogene 19 [ Homo sapiens (human) ]

Gene ID: 730029, updated on 10-Oct-2023

Summary

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Official Symbol
RPSAP19provided by HGNC
Official Full Name
ribosomal protein SA pseudogene 19provided by HGNC
Primary source
HGNC:HGNC:36508
See related
Ensembl:ENSG00000183298 AllianceGenome:HGNC:36508
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPSA_2_81
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Genomic context

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Location:
1p21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (101786266..101787298, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (101635453..101636485, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (102251822..102252854, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1307 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1401 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1125 Neighboring gene Sharpr-MPRA regulatory region 14885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1403 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1409 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:101918390-101919589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1411 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:102129620-102130819 Neighboring gene long intergenic non-protein coding RNA 1709 Neighboring gene RNA, U6 small nuclear 965, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:102308332-102309235 Neighboring gene NANOG hESC enhancer GRCh37_chr1:102312328-102312832 Neighboring gene olfactomedin 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:102334091-102334592 Neighboring gene RNA, U6 small nuclear 352, pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. Elzi DJ, et al. J Proteome Res, 2014 Aug 1. PMID 24999758, Free PMC Article
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  3. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. Shami Shah A, et al. Cell Rep, 2019 May 14. PMID 31091453, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • DKFZp686O1684

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007325.7 

    Range
    101..1133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    101786266..101787298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    101635453..101636485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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