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TPI1P1 triosephosphate isomerase 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 729708, updated on 10-Oct-2023

Summary

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Official Symbol
TPI1P1provided by HGNC
Official Full Name
triosephosphate isomerase 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:35449
See related
AllianceGenome:HGNC:35449
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RCTPI1
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Genomic context

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See TPI1P1 in Genome Data Viewer
Location:
1p31.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (76699755..76701025)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (76537390..76538659)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (77165440..77166710)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Neighboring gene peroxiredoxin 5 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:76828040-76828540 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1210 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:76929871-76931070 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:76967249-76967973 Neighboring gene uncharacterized LOC105378807 Neighboring gene uncharacterized LOC124904201 Neighboring gene Sharpr-MPRA regulatory region 3313 Neighboring gene NANOG hESC enhancer GRCh37_chr1:77231962-77232537 Neighboring gene RNA, U6 small nuclear 161, pseudogene Neighboring gene long intergenic non-protein coding RNA 2567

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the functional gene and several processed pseudogenes in the human triosephosphate isomerase gene family. Brown JR, et al. Mol Cell Biol, 1985 Jul. PMID 4022011, Free PMC Article
  2. Emergence of young human genes after a burst of retroposition in primates. Marques AC, et al. PLoS Biol, 2005 Nov. PMID 16201836, Free PMC Article
  3. Quantitative Lys-ϵ-Gly-Gly (diGly) proteomics coupled with inducible RNAi reveals ubiquitin-mediated proteolysis of DNA damage-inducible transcript 4 (DDIT4) by the E3 ligase HUWE1. Thompson JW, et al. J Biol Chem, 2014 Oct 17. PMID 25147182, Free PMC Article
  4. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. Elzi DJ, et al. J Proteome Res, 2014 Aug 1. PMID 24999758, Free PMC Article
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. Bennett EJ, et al. Cell, 2010 Dec 10. PMID 21145461, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • TPI1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008262.2 

    Range
    101..1371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    76699755..76701025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    76537390..76538659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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