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FAM90A2P family with sequence similarity 90 member A2, pseudogene [ Homo sapiens (human) ]

Gene ID: 729689, updated on 10-Oct-2023

Summary

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Official Symbol
FAM90A2Pprovided by HGNC
Official Full Name
family with sequence similarity 90 member A2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:32250
See related
AllianceGenome:HGNC:32250
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See FAM90A2P in Genome Data Viewer
Location:
8p23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12173454..12177267, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (7557244..7561057)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12030963..12034776, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 66 member D Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:11994353-11994854 Neighboring gene ubiquitin specific peptidase 17 like family member 2 Neighboring gene defensin beta 109D (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12037424-12037936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12037937-12038447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12038587-12039088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12039089-12039588 Neighboring gene ALG1 like 11, pseudogene Neighboring gene family with sequence similarity 86 member B1 Neighboring gene family with sequence similarity 85 member A Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12052743-12053312

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Bosch N, et al. Gene, 2008 Sep 1. PMID 18602769
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Bosch N, et al. Hum Mol Genet, 2007 Nov 1. PMID 17684299

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • DKFZp666M073

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046354.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC130366, CX762572

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12173454..12177267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5611110..5614923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    7557244..7561057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005959.1: Suppressed sequence

    Description
    NG_005959.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases