U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02226 long intergenic non-protein coding RNA 2226 [ Homo sapiens (human) ]

Gene ID: 729506, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02226provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2226provided by HGNC
Primary source
HGNC:HGNC:53095
See related
Ensembl:ENSG00000245729 AllianceGenome:HGNC:53095
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02226 in Genome Data Viewer
Location:
5p15.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (8333483..8457564, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (8273337..8397425, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (8333596..8457677, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900937 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:8060973-8061591 Neighboring gene uncharacterized LOC102723339 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:8090277-8091476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:8165851-8166352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:8166353-8166852 Neighboring gene FAST kinase domains 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22347 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15908 Neighboring gene NANOG hESC enhancer GRCh37_chr5:8473920-8474541 Neighboring gene MIR4458 host gene Neighboring gene microRNA 4458 Neighboring gene uncharacterized LOC105374647 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:8549695-8550894

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_039984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091965, BC043282, DB447020
    Related
    ENST00000501071.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    8333483..8457564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    8273337..8397425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials