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LOC729200 small nuclear ribonucleoprotein polypeptide B2 pseudogene [ Homo sapiens (human) ]

Gene ID: 729200, updated on 10-Oct-2023

Summary

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Gene symbol
LOC729200
Gene description
small nuclear ribonucleoprotein polypeptide B2 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q25.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149111788..149112744, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (150311652..150312608, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (149432924..149433880, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uronyl 2-sulfotransferase Neighboring gene uncharacterized LOC124901424 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149335755-149336309 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25240 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:149358711-149359296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25244 Neighboring gene UST antisense RNA 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:149394281-149395480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25246 Neighboring gene Sharpr-MPRA regulatory region 12512 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17656 Neighboring gene uncharacterized LOC124901426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25247 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25250 Neighboring gene MPRA-validated peak6208 silencer Neighboring gene MPRA-validated peak6209 silencer Neighboring gene TAB2 antisense RNA 1 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide meta-analysis for severe diabetic retinopathy. Grassi MA, et al. Hum Mol Genet, 2011 Jun 15. PMID 21441570, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide meta-analysis for severe diabetic retinopathy.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_017206.1 

    Range
    101..1057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149111788..149112744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    150311652..150312608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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