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CIBAR1P1 CIBAR1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 729073, updated on 10-Oct-2023

Summary

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Official Symbol
CIBAR1P1provided by HGNC
Official Full Name
CIBAR1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:32278
See related
AllianceGenome:HGNC:32278
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM92A2; FAM92A1P1
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Genomic context

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Location:
15q15.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (41163124..41164697)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (38969208..38970777)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (41455322..41456895)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene INO80 complex ATPase subunit Neighboring gene INO80 antisense RNA 1 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr15:41323708-41324208 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr15:41324209-41324709 Neighboring gene MPRA-validated peak2303 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:41407340-41408120 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:41408121-41408900 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:41409682-41410461 Neighboring gene CYCS pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:41443644-41444144 Neighboring gene NANOG hESC enhancer GRCh37_chr15:41472354-41472904 Neighboring gene RNA, 7SL, cytoplasmic 497, pseudogene Neighboring gene exonuclease 3'-5' domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9278 Neighboring gene MPRA-validated peak2306 silencer Neighboring gene calcineurin like EF-hand protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • family with sequence similarity 92 member A1 pseudogene 1
  • family with sequence similarity 92, member A2 (pseudogene)

Clone Names

  • DKFZp564I0278

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011983.2 

    Range
    101..1674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    41163124..41164697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    38969208..38970777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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