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RPL13AP5 ribosomal protein L13a pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 728658, updated on 10-Oct-2023

Summary

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Official Symbol
RPL13AP5provided by HGNC
Official Full Name
ribosomal protein L13a pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:23736
See related
Ensembl:ENSG00000236552 AllianceGenome:HGNC:23736
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA196N24.2; RPL13A_8_1086
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Genomic context

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Location:
10q24.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (96750266..96750923)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (97631500..97632157)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (98510023..98510680)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:98382174-98382395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3829 Neighboring gene ribosomal protein S2 pseudogene 36 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3830 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3832 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3834 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:98460100-98460600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3836 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3837 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2659 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3840 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:98493035-98493740 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:98494688-98495484 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3842 Neighboring gene RNA, U6 small nuclear 1274, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2660 Neighboring gene uncharacterized LOC102723665 Neighboring gene CRISPRi-validated cis-regulatory element chr10.3525 Neighboring gene H3K27ac hESC enhancers GRCh37_chr10:98591864-98592578 and GRCh37_chr10:98592579-98593294 Neighboring gene microRNA 607 Neighboring gene ligand dependent nuclear receptor corepressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026712.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL358235
    Related
    ENST00000439189.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    96750266..96750923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    97631500..97632157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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