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RPL23AP48 ribosomal protein L23a pseudogene 48 [ Homo sapiens (human) ]

Gene ID: 728567, updated on 10-Oct-2023

Summary

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Official Symbol
RPL23AP48provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 48provided by HGNC
Primary source
HGNC:HGNC:36110
See related
Ensembl:ENSG00000219135 AllianceGenome:HGNC:36110
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23A_16_748
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Genomic context

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Location:
6q22.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (121679901..121680478, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (122866891..122867473, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (122001047..122001624, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:121925900-121926110 Neighboring gene RNA, U2 small nuclear 8, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:121940073-121940713 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:121941509-121942161 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:121948343-121949542 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89548 Neighboring gene solute carrier family 25 member 5 pseudogene 7 Neighboring gene LSM14A, SCD6 homolog A (S. cerevisiae) pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:122050901-122051634 Neighboring gene uncharacterized LOC105377979 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:122144457-122145097 Neighboring gene Sharpr-MPRA regulatory region 15426 Neighboring gene high mobility group box 3 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011281.2 

    Range
    101..678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    121679901..121680478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    122866891..122867473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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