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SDHAP2 SDHA pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 727956, updated on 8-Nov-2023

Summary

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Official Symbol
SDHAP2provided by HGNC
Official Full Name
SDHA pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:27408
See related
Ensembl:ENSG00000242086 AllianceGenome:HGNC:27408
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SDHAL2; SDHALP2
Expression
Ubiquitous expression in endometrium (RPKM 12.3), testis (RPKM 12.1) and 25 other tissues See more
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Genomic context

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Location:
3q29
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (195658039..195688871)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (198367744..198398284)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (195384910..195415742)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr3:195345772-195345926 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195350846-195351842 Neighboring gene mucin 20, cell surface associated pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195354448-195355072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195355073-195355695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195359633-195360132 Neighboring gene uncharacterized LOC105374297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195373516-195374016 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195408429-195408928 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195410251-195410972 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195410973-195411692 Neighboring gene MIR570 host gene Neighboring gene uncharacterized LOC124909477 Neighboring gene microRNA 570

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • succinate dehydrogenase complex flavoprotein subunit A pseudogene 2
  • succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2
  • succinate dehydrogenase complex, subunit A, flavoprotein-like 2

Clone Names

  • AC069513.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003265.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK074764, BE712485, BQ445981, DA457940
    Related
    ENST00000429897.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    195658039..195688871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187532.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    28536..59368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187649.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    103529..134361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187678.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    107173..138005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_4

Genomic

  1. NT_187688.1 Reference GRCh38.p14 ALT_REF_LOCI_4

    Range
    104091..134923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_5

Genomic

  1. NT_187689.1 Reference GRCh38.p14 ALT_REF_LOCI_5

    Range
    28536..59368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

  1. NT_187690.1 Reference GRCh38.p14 ALT_REF_LOCI_6

    Range
    104803..135635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

  1. NT_187691.1 Reference GRCh38.p14 ALT_REF_LOCI_7

    Range
    106240..137072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    198367744..198398284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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