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2810459M11Rik RIKEN cDNA 2810459M11 gene [ Mus musculus (house mouse) ]

Gene ID: 72792, updated on 5-Mar-2024

Summary

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Official Symbol
2810459M11Rikprovided by MGI
Official Full Name
RIKEN cDNA 2810459M11 geneprovided by MGI
Primary source
MGI:MGI:1920042
See related
Ensembl:ENSMUSG00000026227 AllianceGenome:MGI:1920042
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in brain ventricular layer and liver lobe. Orthologous to human C2orf72 (chromosome 2 open reading frame 72). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver adult (RPKM 16.2), genital fat pad adult (RPKM 13.1) and 15 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 C5; 1 43.94 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85973585..85983178)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (86045863..86055456)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 617 pseudogene Neighboring gene spermatogenesis associated 3 Neighboring gene STARR-positive B cell enhancer ABC_E1552 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 Neighboring gene predicted gene, 22786 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 2B Neighboring gene predicted gene, 53570

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C2orf72 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144992.1 → NP_001138464.1  uncharacterized protein C2orf72 homolog isoform 1

    See identical proteins and their annotated locations for NP_001138464.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC102506, BC144821, BI134895
    Consensus CDS
    CCDS48302.1
    UniProtKB/TrEMBL
    B7ZMV2
    Related
    ENSMUSP00000131459.2, ENSMUST00000165824.3
    Conserved Domains (1) summary
    pfam15443
    Location:131 → 285
    DUF4630; Domain of unknown function (DUF4630)

  2. NM_001144993.1 → NP_001138465.1  uncharacterized protein C2orf72 homolog isoform 2

    See identical proteins and their annotated locations for NP_001138465.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The resulting isoform (2) is one amino acid shorter than isoform 1.
    Source sequence(s)
    AC102506, BC137675, BI134895
    Consensus CDS
    CCDS78641.1
    UniProtKB/Swiss-Prot
    B2RPZ8, Q9CYS6
    Related
    ENSMUSP00000027429.6, ENSMUST00000027429.11
    Conserved Domains (1) summary
    pfam15443
    Location:131 → 284
    DUF4630; Domain of unknown function (DUF4630)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85973585..85983178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CYS6.2 GenPept UniProtKB/Swiss-Prot:Q9CYS6

Gene LinkOut

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