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DDX11L16 DEAD/H-box helicase 11 like 16 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 727856, updated on 5-Nov-2023

Summary

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Official Symbol
DDX11L16provided by HGNC
Official Full Name
DEAD/H-box helicase 11 like 16 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:37115
See related
AllianceGenome:HGNC:37115
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.0), fat (RPKM 1.1) and 18 other tissues See more
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Genomic context

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Location:
Xq28 and Yq12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (156025658..156028183, complement)
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (57212178..57214703, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (154252395..154254921, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (62449384..62451910, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (155255323..155257848, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (59358329..59360854, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 9 receptor Neighboring gene WASH and IL9R antisense RNA 1 Neighboring gene WASP family homolog 6, pseudogene

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene interleukin 9 receptor Neighboring gene WASH and IL9R antisense RNA 1 Neighboring gene WASP family homolog 6, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Differentially regulated and evolved genes in the fully sequenced Xq/Yq pseudoautosomal region. Ciccodicola A, et al. Hum Mol Genet, 2000 Feb 12. PMID 10655549
  2. DDX11L: a novel transcript family emerging from human subtelomeric regions. Costa V, et al. BMC Genomics, 2009 May 28. PMID 19476624, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16
  • DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 16
  • DEAD/H box polypeptide 11 like 16

Clone Names

  • MGC75272

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110561.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AM992882

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    156025658..156028183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    57212178..57214703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    154252395..154254921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    62449384..62451910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006978.2: Suppressed sequence

    Description
    NG_006978.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

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