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Ccdc71 coiled-coil domain containing 71 [ Mus musculus (house mouse) ]

Gene ID: 72454, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc71provided by MGI
Official Full Name
coiled-coil domain containing 71provided by MGI
Primary source
MGI:MGI:1919704
See related
Ensembl:ENSMUSG00000049305 AllianceGenome:MGI:1919704
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2600016J21Rik
Summary
Orthologous to human CCDC71 (coiled-coil domain containing 71). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 13.7), adrenal adult (RPKM 12.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 F2; 9 59.38 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108329701..108343145)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108452502..108465946)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene interactor of HORMAD1 1 Neighboring gene predicted gene, 25456 Neighboring gene cDNA sequence BC048562 Neighboring gene kelch domain containing 8B Neighboring gene microRNA 12206 Neighboring gene laminin, beta 2 Neighboring gene STARR-positive B cell enhancer ABC_E2916 Neighboring gene ubiquitin specific peptidase 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 71

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378930.1 → NP_001365859.1  coiled-coil domain-containing protein 71

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AC161260
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Conserved Domains (1) summary
    pfam15374
    Location:8 → 430
    CCDC71L; Coiled-coil domain-containing protein 71L

  2. NM_001378931.1 → NP_001365860.1  coiled-coil domain-containing protein 71

    Status: VALIDATED

    Source sequence(s)
    AC161260
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Related
    ENSMUSP00000142230.2, ENSMUST00000193170.2
    Conserved Domains (1) summary
    pfam15374
    Location:8 → 430
    CCDC71L; Coiled-coil domain-containing protein 71L

  3. NM_133744.5 → NP_598505.1  coiled-coil domain-containing protein 71

    See identical proteins and their annotated locations for NP_598505.1

    Status: VALIDATED

    Source sequence(s)
    AC161260
    Consensus CDS
    CCDS23527.1
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Related
    ENSMUSP00000057891.6, ENSMUST00000061209.7
    Conserved Domains (1) summary
    pfam15374
    Location:8 → 430
    CCDC71L; Coiled-coil domain-containing protein 71L

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    108329701..108343145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VEG0.1 GenPept UniProtKB/Swiss-Prot:Q8VEG0

Gene LinkOut

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