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2210408I21Rik RIKEN cDNA 2210408I21 gene [ Mus musculus (house mouse) ]

Gene ID: 72371, updated on 5-Mar-2024

Summary

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Official Symbol
2210408I21Rikprovided by MGI
Official Full Name
RIKEN cDNA 2210408I21 geneprovided by MGI
Primary source
MGI:MGI:1919621
See related
Ensembl:ENSMUSG00000071252 AllianceGenome:MGI:1919621
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including adipose tissue; adrenal gland; genitourinary system; gut; and nervous system. Orthologous to human KIAA0825 (KIAA0825). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 2.4), CNS E18 (RPKM 0.9) and 18 other tissues See more
Orthologs
human all
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Genomic context

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Location:
13 C1; 13 40.98 cM
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (77283636..77761904)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (77135531..77613785)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene multiple C2 domains, transmembrane 1 Neighboring gene chromatin modifying protein 2A pseudogene Neighboring gene 60S ribosomal protein L17-like Neighboring gene SMC5-SMC6 complex localization factor 1 Neighboring gene STARR-seq mESC enhancer starr_35066 Neighboring gene VISTA enhancer mm881 Neighboring gene STARR-seq mESC enhancer starr_35067 Neighboring gene STARR-seq mESC enhancer starr_35068 Neighboring gene STARR-seq mESC enhancer starr_35069 Neighboring gene STARR-seq mESC enhancer starr_35070 Neighboring gene NSA2 ribosome biogenesis homolog pseudogene Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene Neighboring gene predicted gene, 26088

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Clone Names

  • MGC107105

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein KIAA0825 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081353.2 → NP_001074822.1  uncharacterized protein KIAA0825 homolog isoform 2

    See identical proteins and their annotated locations for NP_001074822.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an early polyA signal that omits 16 exons from the 3' end, compared to variant 1. The resulting isoform (2) has a substantially shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC122418
    Consensus CDS
    CCDS88493.1
    UniProtKB/TrEMBL
    Q3TNF8
    Related
    ENSMUSP00000153096.2, ENSMUST00000225605.2

  2. NM_001145676.2 → NP_001139148.1  uncharacterized protein KIAA0825 homolog isoform 1

    See identical proteins and their annotated locations for NP_001139148.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC099692, AC122418, AC141892, AC158511
    Consensus CDS
    CCDS49316.1
    UniProtKB/Swiss-Prot
    E9Q2V0, Q3TPR6, Q3UPC7, Q5FWD2, Q8BQF4, Q9D7T8
    UniProtKB/TrEMBL
    B9EKQ6
    Related
    ENSMUSP00000127449.2, ENSMUST00000168779.3
    Conserved Domains (1) summary
    pfam14906
    Location:515 → 832
    DUF4495; Domain of unknown function (DUF4495)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    77283636..77761904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517397.5 → XP_006517460.1  uncharacterized protein KIAA0825 homolog isoform X4

    UniProtKB/TrEMBL
    B9EKQ6
    Conserved Domains (1) summary
    pfam14906
    Location:515 → 832
    DUF4495; Domain of unknown function (DUF4495)

  2. XM_036158179.1 → XP_036014072.1  uncharacterized protein KIAA0825 homolog isoform X1

    UniProtKB/TrEMBL
    B9EKQ6
    Conserved Domains (1) summary
    pfam14906
    Location:515 → 832
    DUF4495; Domain of unknown function (DUF4495)

  3. XM_036158180.1 → XP_036014073.1  uncharacterized protein KIAA0825 homolog isoform X2

    UniProtKB/TrEMBL
    B9EKQ6
    Conserved Domains (1) summary
    pfam14906
    Location:515 → 832
    DUF4495; Domain of unknown function (DUF4495)

  4. XM_036158181.1 → XP_036014074.1  uncharacterized protein KIAA0825 homolog isoform X3

    UniProtKB/TrEMBL
    B9EKQ6
    Conserved Domains (1) summary
    pfam14906
    Location:461 → 778
    DUF4495; Domain of unknown function (DUF4495)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028215.1: Suppressed sequence

    Description
    NM_028215.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UPC7.3 GenPept UniProtKB/Swiss-Prot:Q3UPC7

Gene LinkOut

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