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Cdpf1 cysteine rich, DPF motif domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 72355, updated on 5-Mar-2024

Summary

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Official Symbol
Cdpf1provided by MGI
Official Full Name
cysteine rich, DPF motif domain containing 1provided by MGI
Primary source
MGI:MGI:1919605
See related
Ensembl:ENSMUSG00000064284 AllianceGenome:MGI:1919605
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210021J22Rik
Summary
Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 10.4), colon adult (RPKM 9.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
15 E2; 15 40.42 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85691173..85695898, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85806972..85811697, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46529 Neighboring gene STARR-positive B cell enhancer ABC_E10873 Neighboring gene peroxisome proliferator activated receptor alpha Neighboring gene STARR-seq mESC enhancer starr_39399 Neighboring gene STARR-positive B cell enhancer ABC_E5505 Neighboring gene polycystin (PKD) family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cysteine-rich DPF motif domain-containing protein 1
Names
UPF0595 protein C22orf40 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164625.1 → NP_001158097.1  cysteine-rich DPF motif domain-containing protein 1

    See identical proteins and their annotated locations for NP_001158097.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC117784, AI849737, AK008763, BQ550379
    Consensus CDS
    CCDS27722.1
    UniProtKB/Swiss-Prot
    E9PUA4, Q8R3A2
    Related
    ENSMUSP00000121889.2, ENSMUST00000134631.8
    Conserved Domains (1) summary
    pfam10170
    Location:13 → 106
    C6_DPF; Cysteine-rich domain

  2. NM_001164626.1 → NP_001158098.1  cysteine-rich DPF motif domain-containing protein 1

    See identical proteins and their annotated locations for NP_001158098.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3, encode the same protein.
    Source sequence(s)
    AC117784, AI849737, AK008763, BY081241
    Consensus CDS
    CCDS27722.1
    UniProtKB/Swiss-Prot
    E9PUA4, Q8R3A2
    Related
    ENSMUSP00000123174.2, ENSMUST00000150995.8
    Conserved Domains (1) summary
    pfam10170
    Location:13 → 106
    C6_DPF; Cysteine-rich domain

  3. NM_197998.2 → NP_932115.2  cysteine-rich DPF motif domain-containing protein 1

    See identical proteins and their annotated locations for NP_932115.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3, encode the same protein.
    Source sequence(s)
    AC117784, AI849737, AK008763, BY081241
    Consensus CDS
    CCDS27722.1
    UniProtKB/Swiss-Prot
    E9PUA4, Q8R3A2
    Related
    ENSMUSP00000071772.7, ENSMUST00000071876.13
    Conserved Domains (1) summary
    pfam10170
    Location:13 → 106
    C6_DPF; Cysteine-rich domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    85691173..85695898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521447.2 → XP_006521510.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006521510.1

    UniProtKB/Swiss-Prot
    E9PUA4, Q8R3A2
    Related
    ENSMUSP00000119728.2, ENSMUST00000144067.8
    Conserved Domains (1) summary
    pfam10170
    Location:13 → 106
    C6_DPF; Cysteine-rich domain

  2. XM_006521448.3 → XP_006521511.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006521511.1

    UniProtKB/Swiss-Prot
    E9PUA4, Q8R3A2
    Conserved Domains (1) summary
    pfam10170
    Location:13 → 106
    C6_DPF; Cysteine-rich domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R3A2.2 GenPept UniProtKB/Swiss-Prot:Q8R3A2

Gene LinkOut

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