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1700025M24Rik RIKEN cDNA 1700025M24 gene [ Mus musculus (house mouse) ]

Gene ID: 72276, updated on 8-Feb-2024

Summary

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Official Symbol
1700025M24Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700025M24 geneprovided by MGI
Primary source
MGI:MGI:1919526
See related
Ensembl:ENSMUSG00000100175 AllianceGenome:MGI:1919526
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 3.6) See more
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Genomic context

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Location:
5; 5 C3.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (73425923..73441527, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (73268580..73284184, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene FRY like transcription coactivator Neighboring gene RIKEN cDNA 1700071G01 gene Neighboring gene STARR-positive B cell enhancer ABC_E6338 Neighboring gene STARR-positive B cell enhancer ABC_E1302 Neighboring gene STARR-positive B cell enhancer ABC_E124 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:73656832-73657076 Neighboring gene predicted gene, 57841 Neighboring gene STARR-seq mESC enhancer starr_13383 Neighboring gene STARR-seq mESC enhancer starr_13384 Neighboring gene predicted gene, 40316 Neighboring gene OCIA domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040687.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC108828
    Related
    ENSMUST00000191524.3

  2. NR_040688.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC108828, AK006359, BY095645
    Related
    ENSMUST00000188758.7

  3. NR_040689.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two consecutive internal exons in the 5' region, and uses an alternate splice site in the 3' region, compared to variant 1.
    Source sequence(s)
    AC108828, AK006359, BB014226
    Related
    ENSMUST00000187620.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    73425923..73441527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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