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1700030K09Rik RIKEN cDNA 1700030K09 gene [ Mus musculus (house mouse) ]

Gene ID: 72254, updated on 5-Mar-2024

Summary

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Official Symbol
1700030K09Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700030K09 geneprovided by MGI
Primary source
MGI:MGI:1919504
See related
Ensembl:ENSMUSG00000052794 AllianceGenome:MGI:1919504
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C19orf44 (chromosome 19 open reading frame 44). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 21.3), ovary adult (RPKM 6.6) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 1700030K09Rik in Genome Data Viewer
Location:
8 B3.3; 8 35.08 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (73197724..73214385)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (72443880..72460541)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8247 Neighboring gene epidermal growth factor receptor pathway substrate 15-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E9731 Neighboring gene STARR-positive B cell enhancer ABC_E5020 Neighboring gene predicted gene, 46043 Neighboring gene calreticulin 3 Neighboring gene STARR-positive B cell enhancer ABC_E359 Neighboring gene STARR-positive B cell enhancer ABC_E6662 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene microRNA 7068 Neighboring gene solute carrier family 35, member E1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf44 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028170.2 → NP_082446.2  uncharacterized protein C19orf44 homolog

    See identical proteins and their annotated locations for NP_082446.2

    Status: VALIDATED

    Source sequence(s)
    AK133815, CO043582
    Consensus CDS
    CCDS22414.1
    UniProtKB/Swiss-Prot
    Q3UZJ9, Q922C1
    UniProtKB/TrEMBL
    E9Q7C0
    Related
    ENSMUSP00000063244.7, ENSMUST00000064853.13
    Conserved Domains (1) summary
    pfam15391
    Location:455 → 608
    DUF4614; Domain of unknown function (DUF4614)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    73197724..73214385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509750.4 → XP_006509813.1  uncharacterized protein C19orf44 homolog isoform X2

    Conserved Domains (2) summary
    pfam04388
    Location:69 → 177
    Hamartin; Hamartin protein
    pfam15391
    Location:149 → 302
    DUF4614; Domain of unknown function (DUF4614)

  2. XM_011242328.4 → XP_011240630.1  uncharacterized protein C19orf44 homolog isoform X1

    UniProtKB/TrEMBL
    E9Q7C0
    Conserved Domains (1) summary
    pfam15391
    Location:484 → 637
    DUF4614; Domain of unknown function (DUF4614)

RNA

  1. XR_870463.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q922C1.2 GenPept UniProtKB/Swiss-Prot:Q922C1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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